Variant report

Variant	rs7741650
Chromosome Location	chr6:82128917-82128918
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10943804	0.80[ASN][1000 genomes]
rs11964002	0.81[ASN][1000 genomes]
rs11966310	0.81[ASN][1000 genomes]
rs12663202	0.82[ASN][1000 genomes]
rs12664134	0.81[ASN][1000 genomes]
rs1419030	0.82[CHB][hapmap];0.82[YRI][hapmap]
rs17438648	0.81[ASN][1000 genomes]
rs17529410	0.81[ASN][1000 genomes]
rs2120535	0.84[ASN][1000 genomes]
rs2323251	0.84[ASN][1000 genomes]
rs57513743	0.82[ASN][1000 genomes]
rs58512216	0.81[ASN][1000 genomes]
rs6900044	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs9294223	0.83[ASN][1000 genomes]
rs9341883	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv34899	chr6:82090758-82161121	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv2757183	chr6:82098060-82161121	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2759450	chr6:82098060-82161121	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv818440	chr6:82120647-82133785	Enhancers	n/a	n/a	inside rSNPs	n/a
7	esv3692904	chr6:82128917-82133785	Enhancers	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7741650	IBTK	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82128800-82129400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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