Variant report

Variant	rs7742007
Chromosome Location	chr6:56563320-56563321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:56559575..56561733-chr6:56563230..56565614,2	MCF-7	breast:
2	chr6:56504038..56506002-chr6:56561278..56563980,2	MCF-7	breast:
3	chr6:56534855..56537779-chr6:56562012..56563518,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2967958	1.00[AMR][1000 genomes]
rs2967959	1.00[AMR][1000 genomes]
rs2967962	1.00[AMR][1000 genomes]
rs41267677	1.00[AMR][1000 genomes]
rs6928319	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56546200-56564800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:56549600-56573600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:56549800-56578000	Weak transcription	Gastric	stomach
4	chr6:56554000-56574600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:56555400-56574600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:56555800-56573600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:56556000-56568400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:56556200-56573600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:56556200-56574400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:56556400-56568000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:56558200-56563400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:56558200-56563600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr6:56558200-56569800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:56558200-56573400	Weak transcription	Stomach Mucosa	stomach
15	chr6:56558200-56578200	Weak transcription	Aorta	Aorta
16	chr6:56558400-56563400	Weak transcription	Brain Angular Gyrus	brain
17	chr6:56558400-56563600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:56558400-56563600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:56558400-56566400	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:56558400-56567000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:56558400-56571600	Weak transcription	Fetal Stomach	stomach
22	chr6:56558400-56573200	Weak transcription	Adipose Nuclei	Adipose
23	chr6:56558400-56577800	Weak transcription	Ovary	ovary
24	chr6:56558400-56579400	Weak transcription	Right Ventricle	heart
25	chr6:56558600-56566400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:56558600-56577800	Weak transcription	Fetal Heart	heart
27	chr6:56559400-56563800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:56559600-56572600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:56559600-56573000	Weak transcription	NH-A	brain
30	chr6:56559800-56577800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:56560200-56579800	Weak transcription	Fetal Muscle Leg	muscle
32	chr6:56560400-56569800	Weak transcription	Brain Anterior Caudate	brain
33	chr6:56560400-56577200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:56560600-56563600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr6:56560600-56572200	Weak transcription	NHDF-Ad	bronchial
36	chr6:56560600-56572400	Weak transcription	HMEC	breast
37	chr6:56561200-56563600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:56561200-56568400	Weak transcription	HUVEC	blood vessel
39	chr6:56561200-56571800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:56561400-56573200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr6:56561800-56564000	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr6:56561800-56564000	Enhancers	Brain Substantia Nigra	brain
43	chr6:56561800-56564000	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr6:56561800-56565200	Strong transcription	GM12878-XiMat	blood
45	chr6:56562000-56569800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:56562000-56569800	Weak transcription	Left Ventricle	heart
47	chr6:56562000-56573200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:56562200-56563600	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr6:56562200-56563800	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr6:56562200-56564800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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