Variant report

Variant	rs7743408
Chromosome Location	chr6:144302362-144302363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144302101..144303644-chr6:144304485..144306870,2	K562	blood:
2	chr6:144163704..144165322-chr6:144301291..144303230,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118495	Chromatin interaction
ENSG00000135521	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11961603	0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2010247	1.00[EUR][1000 genomes]
rs57960633	1.00[EUR][1000 genomes]
rs59407195	1.00[EUR][1000 genomes]
rs6909239	1.00[EUR][1000 genomes]
rs6917779	1.00[EUR][1000 genomes]
rs6925139	1.00[EUR][1000 genomes]
rs7768171	1.00[EUR][1000 genomes]
rs9484844	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv5516	chr6:144300321-144345812	Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144269800-144304400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:144284800-144318400	Weak transcription	Aorta	Aorta
3	chr6:144288400-144314800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:144293600-144309800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:144294800-144302600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:144294800-144312200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:144294800-144313600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:144294800-144315600	Weak transcription	NHDF-Ad	bronchial
9	chr6:144295000-144304600	Weak transcription	Fetal Stomach	stomach
10	chr6:144295000-144312600	Weak transcription	Fetal Intestine Small	intestine
11	chr6:144296000-144304200	Weak transcription	Fetal Kidney	kidney
12	chr6:144297600-144302400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:144297600-144304600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:144298800-144304000	Weak transcription	Fetal Lung	lung
15	chr6:144301000-144303000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:144301400-144302800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:144301600-144303400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:144301800-144304400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:144302000-144302400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:144302200-144302400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:144302200-144305000	Strong transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links