Variant report

Variant	rs6917779
Chromosome Location	chr6:144233658-144233659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11961603	1.00[EUR][1000 genomes]
rs2010247	1.00[EUR][1000 genomes]
rs59407195	1.00[EUR][1000 genomes]
rs6909239	1.00[EUR][1000 genomes]
rs6925139	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7743408	1.00[EUR][1000 genomes]
rs7763053	1.00[TSI][hapmap]
rs7768171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773115	1.00[TSI][hapmap]
rs9484844	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144219200-144234200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:144221200-144239200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:144233000-144233800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:144233400-144233800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:144233400-144234000	ZNF genes & repeats	Fetal Muscle Leg	muscle
6	chr6:144233600-144234000	ZNF genes & repeats	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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