Variant report

Variant	rs7773115
Chromosome Location	chr6:144286730-144286731
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144286319..144288248-chr6:144317369..144319699,2	K562	blood:
2	chr6:144286646..144289265-chr6:144304089..144305699,2	K562	blood:
3	chr6:143832151..143834228-chr6:144285681..144288374,2	MCF-7	breast:
4	chr6:144286109..144288326-chr6:144291907..144294386,3	K562	blood:

Variant related genes	Relation type
ENSG00000001036	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11964079	1.00[MEX][hapmap]
rs2273324	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2876579	1.00[ASN][1000 genomes]
rs6902313	1.00[MEX][hapmap]
rs6912793	1.00[MEX][hapmap]
rs6914895	1.00[MEX][hapmap]
rs6917779	1.00[TSI][hapmap]
rs6925139	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7740089	1.00[TSI][hapmap]
rs7744101	1.00[MEX][hapmap]
rs9496885	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144258400-144288000	Weak transcription	Primary T cells from cord blood	blood
2	chr6:144261600-144287000	Weak transcription	GM12878-XiMat	blood
3	chr6:144269200-144290200	Weak transcription	Fetal Thymus	thymus
4	chr6:144269400-144287400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:144269400-144289600	Weak transcription	Pancreas	Pancrea
6	chr6:144269600-144294000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:144269800-144289800	Weak transcription	Ovary	ovary
8	chr6:144269800-144296000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:144269800-144304400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:144271400-144296800	Weak transcription	Primary B cells from cord blood	blood
11	chr6:144274400-144289800	Weak transcription	Esophagus	oesophagus
12	chr6:144275000-144293000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr6:144276600-144287000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:144277200-144291200	Genic enhancers	Fetal Muscle Leg	muscle
15	chr6:144277600-144287000	Weak transcription	HMEC	breast
16	chr6:144280200-144290400	Weak transcription	Fetal Heart	heart
17	chr6:144280400-144287200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
18	chr6:144280400-144287400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
19	chr6:144280400-144288200	Weak transcription	Gastric	stomach
20	chr6:144280400-144291400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:144280600-144287800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
22	chr6:144280800-144287800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
23	chr6:144281200-144286800	Enhancers	Adipose Nuclei	Adipose
24	chr6:144281800-144294800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr6:144283200-144287800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:144283800-144287400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:144284200-144287000	Genic enhancers	Fetal Muscle Trunk	muscle
28	chr6:144284200-144287200	Weak transcription	Brain Germinal Matrix	brain
29	chr6:144284200-144287400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:144284200-144287800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
31	chr6:144284200-144289000	Weak transcription	NHLF	lung
32	chr6:144284400-144286800	Genic enhancers	Fetal Intestine Large	intestine
33	chr6:144284600-144287000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:144284600-144288200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
35	chr6:144284600-144288400	Strong transcription	Stomach Smooth Muscle	stomach
36	chr6:144284600-144290600	Weak transcription	Primary B cells from peripheral blood	blood
37	chr6:144284800-144286800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:144284800-144287800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
39	chr6:144284800-144294400	Weak transcription	Fetal Brain Male	brain
40	chr6:144284800-144318400	Weak transcription	Aorta	Aorta
41	chr6:144285000-144287400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
42	chr6:144285000-144287800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:144285000-144292400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:144285200-144287000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:144285200-144287400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:144285200-144288400	Strong transcription	Primary hematopoietic stem cells	blood
47	chr6:144285200-144289000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:144285400-144286800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:144285400-144287000	Enhancers	K562	blood
50	chr6:144285400-144287200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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