Variant report

Variant	rs9496885
Chromosome Location	chr6:144476185-144476186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144474360..144477861-chr6:144491638..144494862,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12664659	0.93[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17073463	1.00[GIH][hapmap]
rs59830415	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60302873	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6925139	1.00[TSI][hapmap]
rs7740089	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7740095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7746626	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7755842	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7755888	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7761584	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7773115	1.00[TSI][hapmap]
rs9321964	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024333	chr6:144468065-144502824	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144472000-144478200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:144472600-144477400	Weak transcription	Spleen	Spleen
3	chr6:144472600-144478200	Weak transcription	Pancreas	Pancrea
4	chr6:144472800-144476400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:144472800-144478400	Weak transcription	NHDF-Ad	bronchial
6	chr6:144472800-144478600	Weak transcription	HSMMtube	muscle
7	chr6:144472800-144479200	Weak transcription	NHEK	skin
8	chr6:144472800-144479400	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:144473000-144476800	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
10	chr6:144473000-144478000	Weak transcription	NHLF	lung
11	chr6:144473000-144478200	Weak transcription	Right Ventricle	heart
12	chr6:144473200-144476400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:144473200-144476600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:144473200-144477800	Weak transcription	Liver	Liver
15	chr6:144473200-144478200	Weak transcription	Lung	lung
16	chr6:144473200-144478200	Weak transcription	Ovary	ovary
17	chr6:144473200-144478400	Enhancers	Fetal Heart	heart
18	chr6:144473200-144479000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:144473200-144482000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:144473400-144476600	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:144473400-144477400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:144473400-144477800	Weak transcription	HUVEC	blood vessel
23	chr6:144473400-144513800	Weak transcription	Primary T cells from cord blood	blood
24	chr6:144473600-144478000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr6:144473600-144481600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:144473600-144507800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:144473800-144476600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:144473800-144478000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:144474200-144476600	Weak transcription	Placenta	Placenta
30	chr6:144474200-144499400	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr6:144474600-144476600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr6:144474600-144476600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr6:144475000-144476600	Weak transcription	Primary B cells from peripheral blood	blood
34	chr6:144475000-144477400	Weak transcription	Left Ventricle	heart
35	chr6:144475000-144500600	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:144475200-144476200	Weak transcription	Primary hematopoietic stem cells	blood
37	chr6:144475200-144476400	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr6:144475400-144476400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr6:144475400-144477000	Flanking Active TSS	GM12878-XiMat	blood
40	chr6:144475400-144478000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:144475400-144478200	Weak transcription	Right Atrium	heart
42	chr6:144475600-144476400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:144475600-144481200	Enhancers	Adipose Nuclei	Adipose
44	chr6:144475800-144476200	Weak transcription	Primary B cells from cord blood	blood
45	chr6:144475800-144476600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
46	chr6:144475800-144477800	Genic enhancers	Primary monocytes fromperipheralblood	blood
47	chr6:144476000-144476800	Enhancers	Small Intestine	intestine

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