Variant report

Variant	rs9321964
Chromosome Location	chr6:144477711-144477712
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144472179..144474149-chr6:144476552..144479484,2	K562	blood:
2	chr6:144474360..144477861-chr6:144491638..144494862,3	K562	blood:
3	chr6:144476586..144479088-chr6:144535900..144538153,2	MCF-7	breast:
4	chr6:144477392..144479539-chr6:144497614..144499200,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12664659	0.93[CHB][hapmap];0.89[JPT][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59830415	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60302873	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740089	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7740095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746626	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7755842	0.86[CHB][hapmap];0.89[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755888	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7761584	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9496885	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024333	chr6:144468065-144502824	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144472000-144478200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:144472600-144478200	Weak transcription	Pancreas	Pancrea
3	chr6:144472800-144478400	Weak transcription	NHDF-Ad	bronchial
4	chr6:144472800-144478600	Weak transcription	HSMMtube	muscle
5	chr6:144472800-144479200	Weak transcription	NHEK	skin
6	chr6:144472800-144479400	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:144473000-144478000	Weak transcription	NHLF	lung
8	chr6:144473000-144478200	Weak transcription	Right Ventricle	heart
9	chr6:144473200-144477800	Weak transcription	Liver	Liver
10	chr6:144473200-144478200	Weak transcription	Lung	lung
11	chr6:144473200-144478200	Weak transcription	Ovary	ovary
12	chr6:144473200-144478400	Enhancers	Fetal Heart	heart
13	chr6:144473200-144479000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:144473200-144482000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:144473400-144477800	Weak transcription	HUVEC	blood vessel
16	chr6:144473400-144513800	Weak transcription	Primary T cells from cord blood	blood
17	chr6:144473600-144478000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr6:144473600-144481600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:144473600-144507800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:144473800-144478000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:144474200-144499400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:144475000-144500600	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr6:144475400-144478000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:144475400-144478200	Weak transcription	Right Atrium	heart
25	chr6:144475600-144481200	Enhancers	Adipose Nuclei	Adipose
26	chr6:144475800-144477800	Genic enhancers	Primary monocytes fromperipheralblood	blood
27	chr6:144476400-144478400	Genic enhancers	Primary T cells fromperipheralblood	blood
28	chr6:144476400-144479000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:144476600-144478200	Enhancers	Placenta	Placenta
30	chr6:144476600-144478400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:144476600-144493600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:144476800-144477800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr6:144476800-144478200	Weak transcription	Small Intestine	intestine
34	chr6:144476800-144500600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:144477200-144480200	Enhancers	Fetal Muscle Trunk	muscle
36	chr6:144477200-144480600	Enhancers	Fetal Muscle Leg	muscle
37	chr6:144477400-144478000	Enhancers	Primary B cells from peripheral blood	blood
38	chr6:144477400-144478000	Flanking Active TSS	GM12878-XiMat	blood
39	chr6:144477400-144478200	Enhancers	Spleen	Spleen
40	chr6:144477400-144478600	Enhancers	Primary B cells from cord blood	blood
41	chr6:144477400-144478800	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr6:144477400-144479800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:144477400-144480200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr6:144477400-144482000	Enhancers	Fetal Lung	lung
45	chr6:144477600-144477800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:144477600-144478000	Weak transcription	Left Ventricle	heart
47	chr6:144477600-144478200	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr6:144477600-144478400	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links