Variant report

Variant	rs59830415
Chromosome Location	chr6:144473080-144473081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144472179..144474149-chr6:144476552..144479484,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12664659	0.97[ASN][1000 genomes]
rs60302873	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7740089	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7740095	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7746626	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755842	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7755888	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7761584	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321964	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9496885	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024333	chr6:144468065-144502824	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144470400-144473200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:144470800-144473400	Bivalent/Poised TSS	Psoas Muscle	Psoas
3	chr6:144471000-144473200	Active TSS	Sigmoid Colon	Sigmoid Colon
4	chr6:144471200-144474200	Active TSS	GM12878-XiMat	blood
5	chr6:144472000-144473200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:144472000-144473200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:144472000-144478200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:144472200-144473200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chr6:144472200-144473200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:144472200-144473200	Flanking Active TSS	Hela-S3	cervix
11	chr6:144472200-144473600	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr6:144472400-144473400	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr6:144472400-144476000	Weak transcription	Small Intestine	intestine
14	chr6:144472600-144473200	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr6:144472600-144473200	Flanking Active TSS	Primary B cells from peripheral blood	blood
16	chr6:144472600-144473200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
17	chr6:144472600-144473200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
18	chr6:144472600-144473200	Flanking Active TSS	Duodenum Mucosa	Duodenum
19	chr6:144472600-144473200	Active TSS	Rectal Smooth Muscle	rectum
20	chr6:144472600-144473400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:144472600-144473600	Flanking Active TSS	Primary hematopoietic stem cells	blood
22	chr6:144472600-144473600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr6:144472600-144473600	Active TSS	Placenta	Placenta
24	chr6:144472600-144473800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr6:144472600-144473800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:144472600-144475200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr6:144472600-144477400	Weak transcription	Spleen	Spleen
28	chr6:144472600-144478200	Weak transcription	Pancreas	Pancrea
29	chr6:144472800-144473200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
30	chr6:144472800-144473200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:144472800-144473200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr6:144472800-144473200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:144472800-144473200	Enhancers	Aorta	Aorta
34	chr6:144472800-144473200	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr6:144472800-144473200	Flanking Active TSS	Fetal Heart	heart
36	chr6:144472800-144473200	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
37	chr6:144472800-144473200	Enhancers	Fetal Thymus	thymus
38	chr6:144472800-144473200	Bivalent Enhancer	Dnd41	blood
39	chr6:144472800-144473400	Active TSS	Primary T cells from cord blood	blood
40	chr6:144472800-144473400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:144472800-144473400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:144472800-144475000	Enhancers	Left Ventricle	heart
43	chr6:144472800-144476400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:144472800-144478400	Weak transcription	NHDF-Ad	bronchial
45	chr6:144472800-144478600	Weak transcription	HSMMtube	muscle
46	chr6:144472800-144479200	Weak transcription	NHEK	skin
47	chr6:144472800-144479400	Weak transcription	Colon Smooth Muscle	Colon
48	chr6:144473000-144473200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr6:144473000-144473200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr6:144473000-144473200	Active TSS	Liver	Liver

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