Variant report

Variant	rs7746626
Chromosome Location	chr6:144472198-144472199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144472179..144474149-chr6:144476552..144479484,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12664659	0.93[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs59830415	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60302873	0.97[ASN][1000 genomes]
rs7740089	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7740095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7755842	0.86[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs7755888	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7761584	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321964	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9496885	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024333	chr6:144468065-144502824	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144470400-144473200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:144470600-144472200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
3	chr6:144470600-144472200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
4	chr6:144470600-144472400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
5	chr6:144470600-144472800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr6:144470600-144473000	Active TSS	Right Ventricle	heart
7	chr6:144470800-144472200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr6:144470800-144472200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:144470800-144472200	Active TSS	Colon Smooth Muscle	Colon
10	chr6:144470800-144472200	Bivalent/Poised TSS	Fetal Brain Female	brain
11	chr6:144470800-144472200	Active TSS	Rectal Smooth Muscle	rectum
12	chr6:144470800-144472200	Active TSS	NHLF	lung
13	chr6:144470800-144472400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:144470800-144472400	Active TSS	Primary T cells from cord blood	blood
15	chr6:144470800-144472400	Active TSS	Brain Hippocampus Middle	brain
16	chr6:144470800-144472400	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr6:144470800-144472400	Active TSS	A549	lung
18	chr6:144470800-144472600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
19	chr6:144470800-144472600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
20	chr6:144470800-144472600	Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr6:144470800-144472800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:144470800-144472800	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr6:144470800-144473000	Active TSS	Right Atrium	heart
24	chr6:144470800-144473400	Bivalent/Poised TSS	Psoas Muscle	Psoas
25	chr6:144471000-144472200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:144471000-144472200	Active TSS	Brain Anterior Caudate	brain
27	chr6:144471000-144472200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
28	chr6:144471000-144472200	Active TSS	Brain Substantia Nigra	brain
29	chr6:144471000-144472200	Active TSS	Rectal Mucosa Donor 31	rectum
30	chr6:144471000-144472200	Active TSS	HSMM	muscle
31	chr6:144471000-144472200	Active TSS	HSMMtube	muscle
32	chr6:144471000-144472400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:144471000-144472400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:144471000-144472400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr6:144471000-144472400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:144471000-144472400	Active TSS	Brain Cingulate Gyrus	brain
37	chr6:144471000-144472400	Active TSS	Small Intestine	intestine
38	chr6:144471000-144472600	Active TSS	Primary T killer memory cells from peripheral blood	blood
39	chr6:144471000-144472600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:144471000-144472600	Active TSS	Left Ventricle	heart
41	chr6:144471000-144472600	Active TSS	Spleen	Spleen
42	chr6:144471000-144472800	Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr6:144471000-144472800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
44	chr6:144471000-144472800	Active TSS	Aorta	Aorta
45	chr6:144471000-144472800	Active TSS	Esophagus	oesophagus
46	chr6:144471000-144473200	Active TSS	Sigmoid Colon	Sigmoid Colon
47	chr6:144471200-144472200	Active TSS	Muscle Satellite Cultured Cells	--
48	chr6:144471200-144472200	Active TSS	Adipose Nuclei	Adipose
49	chr6:144471200-144472200	Active TSS	Placenta Amnion	Placenta Amnion
50	chr6:144471200-144472200	Active TSS	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links