Variant report

Variant	rs7755888
Chromosome Location	chr6:144479195-144479196
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144472179..144474149-chr6:144476552..144479484,2	K562	blood:
2	chr6:144477392..144479539-chr6:144497614..144499200,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12664659	0.93[CHB][hapmap];0.89[JPT][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59830415	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs60302873	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7740089	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7740095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7746626	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7755842	0.86[CHB][hapmap];0.89[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7761584	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9321964	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9496885	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024333	chr6:144468065-144502824	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144472800-144479200	Weak transcription	NHEK	skin
2	chr6:144472800-144479400	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:144473200-144482000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr6:144473400-144513800	Weak transcription	Primary T cells from cord blood	blood
5	chr6:144473600-144481600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:144473600-144507800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:144474200-144499400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:144475000-144500600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:144475600-144481200	Enhancers	Adipose Nuclei	Adipose
10	chr6:144476600-144493600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:144476800-144500600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:144477200-144480200	Enhancers	Fetal Muscle Trunk	muscle
13	chr6:144477200-144480600	Enhancers	Fetal Muscle Leg	muscle
14	chr6:144477400-144479800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:144477400-144480200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:144477400-144482000	Enhancers	Fetal Lung	lung
17	chr6:144477800-144479600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:144477800-144479600	Enhancers	HUVEC	blood vessel
19	chr6:144477800-144480200	Enhancers	Liver	Liver
20	chr6:144477800-144480400	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
21	chr6:144478000-144479600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:144478000-144480000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:144478000-144480200	Enhancers	Left Ventricle	heart
24	chr6:144478000-144480200	Enhancers	NHLF	lung
25	chr6:144478000-144483200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr6:144478200-144480200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:144478200-144480400	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr6:144478200-144480400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:144478200-144480400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
30	chr6:144478200-144480600	Genic enhancers	Primary monocytes fromperipheralblood	blood
31	chr6:144478200-144481200	Enhancers	Right Ventricle	heart
32	chr6:144478400-144479600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:144478400-144479800	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr6:144478400-144480000	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr6:144478400-144480200	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr6:144478400-144480200	Enhancers	NHDF-Ad	bronchial
37	chr6:144478400-144480400	Enhancers	A549	lung
38	chr6:144478400-144480400	Enhancers	HSMM	muscle
39	chr6:144478400-144481000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:144478600-144479200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:144478600-144479400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:144478600-144479800	Weak transcription	Primary B cells from cord blood	blood
43	chr6:144478600-144480000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:144478600-144480200	Weak transcription	Small Intestine	intestine
45	chr6:144478600-144480200	Genic enhancers	GM12878-XiMat	blood
46	chr6:144478600-144480200	Enhancers	HSMMtube	muscle
47	chr6:144478600-144480400	Enhancers	Osteobl	bone
48	chr6:144478800-144479200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr6:144478800-144479200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr6:144478800-144479200	Enhancers	Fetal Heart	heart

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