Variant report

Variant	rs12664659
Chromosome Location	chr6:144477243-144477244
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144472179..144474149-chr6:144476552..144479484,2	K562	blood:
2	chr6:144474360..144477861-chr6:144491638..144494862,3	K562	blood:
3	chr6:144476586..144479088-chr6:144535900..144538153,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs59830415	0.97[ASN][1000 genomes]
rs60302873	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7740089	0.93[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7740095	0.93[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7746626	0.93[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs7755842	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7755888	0.93[CHB][hapmap];0.89[JPT][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7761584	0.93[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9321964	0.93[CHB][hapmap];0.89[JPT][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496885	0.93[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024333	chr6:144468065-144502824	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144472000-144478200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:144472600-144477400	Weak transcription	Spleen	Spleen
3	chr6:144472600-144478200	Weak transcription	Pancreas	Pancrea
4	chr6:144472800-144478400	Weak transcription	NHDF-Ad	bronchial
5	chr6:144472800-144478600	Weak transcription	HSMMtube	muscle
6	chr6:144472800-144479200	Weak transcription	NHEK	skin
7	chr6:144472800-144479400	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:144473000-144478000	Weak transcription	NHLF	lung
9	chr6:144473000-144478200	Weak transcription	Right Ventricle	heart
10	chr6:144473200-144477800	Weak transcription	Liver	Liver
11	chr6:144473200-144478200	Weak transcription	Lung	lung
12	chr6:144473200-144478200	Weak transcription	Ovary	ovary
13	chr6:144473200-144478400	Enhancers	Fetal Heart	heart
14	chr6:144473200-144479000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:144473200-144482000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:144473400-144477400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:144473400-144477800	Weak transcription	HUVEC	blood vessel
18	chr6:144473400-144513800	Weak transcription	Primary T cells from cord blood	blood
19	chr6:144473600-144478000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr6:144473600-144481600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:144473600-144507800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:144473800-144478000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:144474200-144499400	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr6:144475000-144477400	Weak transcription	Left Ventricle	heart
25	chr6:144475000-144500600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:144475400-144478000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:144475400-144478200	Weak transcription	Right Atrium	heart
28	chr6:144475600-144481200	Enhancers	Adipose Nuclei	Adipose
29	chr6:144475800-144477800	Genic enhancers	Primary monocytes fromperipheralblood	blood
30	chr6:144476400-144477400	Weak transcription	Primary B cells from cord blood	blood
31	chr6:144476400-144478400	Genic enhancers	Primary T cells fromperipheralblood	blood
32	chr6:144476400-144479000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:144476600-144477400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:144476600-144477600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:144476600-144478200	Enhancers	Placenta	Placenta
36	chr6:144476600-144478400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:144476600-144493600	Weak transcription	Primary hematopoietic stem cells	blood
38	chr6:144476800-144477400	Weak transcription	Primary B cells from peripheral blood	blood
39	chr6:144476800-144477400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr6:144476800-144477400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr6:144476800-144477800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr6:144476800-144478200	Weak transcription	Small Intestine	intestine
43	chr6:144476800-144500600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr6:144477000-144477400	Enhancers	GM12878-XiMat	blood
45	chr6:144477200-144477600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
46	chr6:144477200-144480200	Enhancers	Fetal Muscle Trunk	muscle
47	chr6:144477200-144480600	Enhancers	Fetal Muscle Leg	muscle

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