Variant report

Variant	rs7755842
Chromosome Location	chr6:144479462-144479463
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144472179..144474149-chr6:144476552..144479484,2	K562	blood:
2	chr6:144477392..144479539-chr6:144497614..144499200,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12664659	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59830415	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60302873	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740089	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7740095	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746626	0.86[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs7755888	0.86[CHB][hapmap];0.89[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7761584	0.86[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs9321964	0.86[CHB][hapmap];0.89[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496885	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024333	chr6:144468065-144502824	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144473200-144482000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr6:144473400-144513800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:144473600-144481600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:144473600-144507800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:144474200-144499400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:144475000-144500600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:144475600-144481200	Enhancers	Adipose Nuclei	Adipose
8	chr6:144476600-144493600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:144476800-144500600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:144477200-144480200	Enhancers	Fetal Muscle Trunk	muscle
11	chr6:144477200-144480600	Enhancers	Fetal Muscle Leg	muscle
12	chr6:144477400-144479800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:144477400-144480200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:144477400-144482000	Enhancers	Fetal Lung	lung
15	chr6:144477800-144479600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:144477800-144479600	Enhancers	HUVEC	blood vessel
17	chr6:144477800-144480200	Enhancers	Liver	Liver
18	chr6:144477800-144480400	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
19	chr6:144478000-144479600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:144478000-144480000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:144478000-144480200	Enhancers	Left Ventricle	heart
22	chr6:144478000-144480200	Enhancers	NHLF	lung
23	chr6:144478000-144483200	Weak transcription	Primary B cells from peripheral blood	blood
24	chr6:144478200-144480200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:144478200-144480400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr6:144478200-144480400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:144478200-144480400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
28	chr6:144478200-144480600	Genic enhancers	Primary monocytes fromperipheralblood	blood
29	chr6:144478200-144481200	Enhancers	Right Ventricle	heart
30	chr6:144478400-144479600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:144478400-144479800	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr6:144478400-144480000	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr6:144478400-144480200	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr6:144478400-144480200	Enhancers	NHDF-Ad	bronchial
35	chr6:144478400-144480400	Enhancers	A549	lung
36	chr6:144478400-144480400	Enhancers	HSMM	muscle
37	chr6:144478400-144481000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:144478600-144479800	Weak transcription	Primary B cells from cord blood	blood
39	chr6:144478600-144480000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:144478600-144480200	Weak transcription	Small Intestine	intestine
41	chr6:144478600-144480200	Genic enhancers	GM12878-XiMat	blood
42	chr6:144478600-144480200	Enhancers	HSMMtube	muscle
43	chr6:144478600-144480400	Enhancers	Osteobl	bone
44	chr6:144478800-144479600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:144478800-144479600	Enhancers	HMEC	breast
46	chr6:144478800-144479800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr6:144478800-144480000	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr6:144478800-144480200	Enhancers	Muscle Satellite Cultured Cells	--
49	chr6:144478800-144480400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:144478800-144480400	Enhancers	NH-A	brain

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