Variant report

Variant	rs7743656
Chromosome Location	chr6:140258700-140258701
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140250688..140253465-chr6:140258352..140260834,2	K562	blood:
2	chr6:140258578..140260462-chr6:140302697..140304606,2	K562	blood:
3	chr6:140247524..140250315-chr6:140258612..140260750,2	K562	blood:
4	chr6:140257717..140262130-chr6:140263178..140266087,5	K562	blood:
5	chr6:140256563..140258976-chr6:140261576..140263079,2	K562	blood:
6	chr6:140147200..140149310-chr6:140258433..140260854,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1028469	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12525047	0.90[ASN][1000 genomes]
rs12526885	0.90[ASN][1000 genomes]
rs12663217	0.89[ASN][1000 genomes]
rs12663483	0.90[ASN][1000 genomes]
rs12665399	0.88[ASN][1000 genomes]
rs13194827	0.88[ASN][1000 genomes]
rs13204837	0.89[ASN][1000 genomes]
rs1416289	0.88[ASN][1000 genomes]
rs1933742	0.88[ASN][1000 genomes]
rs1953788	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1953789	0.90[ASN][1000 genomes]
rs586246	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs587235	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs592056	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs598498	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs616279	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs618515	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs622216	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62429515	0.90[ASN][1000 genomes]
rs62429516	0.90[ASN][1000 genomes]
rs62429517	0.90[ASN][1000 genomes]
rs647968	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67013338	0.90[ASN][1000 genomes]
rs679849	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs680290	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs681235	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6926807	0.90[ASN][1000 genomes]
rs6928433	0.88[ASN][1000 genomes]
rs724061	0.88[ASN][1000 genomes]
rs856646	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9373255	0.90[ASN][1000 genomes]
rs9376482	0.90[ASN][1000 genomes]
rs9385888	0.90[ASN][1000 genomes]
rs9389733	0.89[ASN][1000 genomes]
rs9399298	0.90[ASN][1000 genomes]
rs9399299	0.90[ASN][1000 genomes]
rs9403134	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140242400-140260200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:140254800-140259200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:140255000-140262200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:140258400-140259200	Active TSS	K562	blood

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