Variant report

Variant	rs6928433
Chromosome Location	chr6:140295885-140295886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139696942..139698780-chr6:140294038..140296688,2	K562	blood:
2	chr6:140289417..140292711-chr6:140293441..140296166,4	K562	blood:
3	chr6:139697609..139700104-chr6:140295382..140298304,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1028469	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12175776	0.82[EUR][1000 genomes]
rs12525047	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12526885	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12663217	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12663483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12665399	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194747	0.87[EUR][1000 genomes]
rs13194827	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204837	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1416289	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933742	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1953788	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1953789	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs586246	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs587235	0.96[ASN][1000 genomes]
rs592056	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs598498	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs616279	0.95[ASN][1000 genomes]
rs618515	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs622216	0.96[ASN][1000 genomes]
rs62429515	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62429516	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62429517	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs647968	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs67013338	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs679849	0.96[ASN][1000 genomes]
rs680290	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs681235	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6926807	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs724061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743656	0.88[ASN][1000 genomes]
rs856646	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9373255	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9376482	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9376485	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9385888	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9389733	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9399298	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9399299	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403134	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403135	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140287800-140299000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:140289600-140297200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:140291600-140302000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:140292600-140297000	Weak transcription	Placenta	Placenta
5	chr6:140292600-140306000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:140294200-140296400	Enhancers	Fetal Lung	lung
7	chr6:140294200-140296600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:140294200-140299400	Enhancers	Fetal Heart	heart
9	chr6:140294400-140296400	Enhancers	Osteobl	bone
10	chr6:140294600-140296400	Enhancers	Hela-S3	cervix
11	chr6:140295200-140296600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:140295200-140299000	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:140295200-140303000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:140295400-140297000	Weak transcription	NHDF-Ad	bronchial
15	chr6:140295400-140297600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:140295400-140298000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:140295400-140298600	Weak transcription	A549	lung
18	chr6:140295400-140298800	Weak transcription	HSMMtube	muscle
19	chr6:140295400-140300400	Weak transcription	Fetal Kidney	kidney
20	chr6:140295400-140300400	Weak transcription	Fetal Stomach	stomach
21	chr6:140295400-140300400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr6:140295400-140301800	Weak transcription	Aorta	Aorta
23	chr6:140295400-140302000	Weak transcription	Adipose Nuclei	Adipose
24	chr6:140295400-140302800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:140295400-140303000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr6:140295600-140296000	Weak transcription	NHLF	lung
27	chr6:140295600-140296600	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr6:140295600-140297400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:140295600-140298200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:140295600-140298600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:140295600-140298800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:140295600-140299000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr6:140295600-140302000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:140295600-140302600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:140295600-140303400	Weak transcription	Right Atrium	heart
36	chr6:140295800-140296000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:140295800-140296600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:140295800-140298600	Weak transcription	HSMM	muscle
39	chr6:140295800-140298800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr6:140295800-140298800	Weak transcription	NH-A	brain
41	chr6:140295800-140299000	Weak transcription	HUVEC	blood vessel
42	chr6:140295800-140299000	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links