Variant report

Variant	rs9376485
Chromosome Location	chr6:140340836-140340837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10434888	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12175776	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12525047	0.88[EUR][1000 genomes]
rs12526885	0.88[EUR][1000 genomes]
rs12662747	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12663483	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12664312	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12665399	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13194747	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13194827	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13204837	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1324130	0.89[EUR][1000 genomes]
rs1416289	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17069736	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17069768	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1933742	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1953788	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1953789	0.88[EUR][1000 genomes]
rs35332737	0.81[EUR][1000 genomes]
rs35392782	0.89[EUR][1000 genomes]
rs36126113	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56044741	0.81[EUR][1000 genomes]
rs62429515	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62429516	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62429517	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67013338	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6926807	0.88[EUR][1000 genomes]
rs6928433	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs724061	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72973906	0.81[EUR][1000 genomes]
rs9373255	0.88[EUR][1000 genomes]
rs9373256	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9376482	0.88[EUR][1000 genomes]
rs9376493	0.82[EUR][1000 genomes]
rs9376494	0.83[EUR][1000 genomes]
rs9376495	0.81[EUR][1000 genomes]
rs9376496	0.81[EUR][1000 genomes]
rs9385888	0.86[EUR][1000 genomes]
rs9385895	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9385897	0.82[EUR][1000 genomes]
rs9389733	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9389741	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9389743	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9389744	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9389745	0.82[EUR][1000 genomes]
rs9389746	0.81[EUR][1000 genomes]
rs9389748	0.82[EUR][1000 genomes]
rs9399298	0.88[EUR][1000 genomes]
rs9399299	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9399303	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9399304	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9399305	0.85[EUR][1000 genomes]
rs9399307	0.81[EUR][1000 genomes]
rs9403134	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9403135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403138	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403139	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403143	0.82[EUR][1000 genomes]
rs9403145	0.82[EUR][1000 genomes]
rs9403146	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140339600-140361200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:140340400-140341200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr6:140340600-140341800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:140340600-140341800	ZNF genes & repeats	Fetal Intestine Small	intestine

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