Variant report

Variant	rs36126113
Chromosome Location	chr6:140360260-140360261
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10434888	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10872525	0.81[EUR][1000 genomes]
rs1119397	0.81[EUR][1000 genomes]
rs12175776	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12662151	0.82[EUR][1000 genomes]
rs12662747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664312	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13191189	0.82[EUR][1000 genomes]
rs1324130	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17069736	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17069768	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17069852	0.81[EUR][1000 genomes]
rs17069854	0.81[EUR][1000 genomes]
rs34358600	0.81[EUR][1000 genomes]
rs35332737	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35392782	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35465283	0.81[EUR][1000 genomes]
rs36074095	0.82[EUR][1000 genomes]
rs56044741	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62431097	0.81[EUR][1000 genomes]
rs66460448	0.83[EUR][1000 genomes]
rs71562538	0.82[EUR][1000 genomes]
rs72973906	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7761894	0.81[EUR][1000 genomes]
rs9373256	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9373258	0.81[EUR][1000 genomes]
rs9373259	0.81[EUR][1000 genomes]
rs9373260	0.81[EUR][1000 genomes]
rs9373261	0.82[EUR][1000 genomes]
rs9373262	0.81[EUR][1000 genomes]
rs9376485	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9376493	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9376494	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9376495	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9376496	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9376497	0.81[EUR][1000 genomes]
rs9376498	0.82[EUR][1000 genomes]
rs9376500	0.81[EUR][1000 genomes]
rs9376502	0.81[EUR][1000 genomes]
rs9376503	0.81[EUR][1000 genomes]
rs9385895	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9385896	0.82[EUR][1000 genomes]
rs9385897	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9385899	0.82[EUR][1000 genomes]
rs9385900	0.83[EUR][1000 genomes]
rs9385901	0.81[EUR][1000 genomes]
rs9385902	0.81[EUR][1000 genomes]
rs9385903	0.82[EUR][1000 genomes]
rs9385906	0.81[EUR][1000 genomes]
rs9389741	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9389743	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9389744	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9389745	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9389746	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9389748	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9389749	0.82[EUR][1000 genomes]
rs9389750	0.81[EUR][1000 genomes]
rs9389751	0.81[EUR][1000 genomes]
rs9389755	0.82[EUR][1000 genomes]
rs9389757	0.82[EUR][1000 genomes]
rs9389760	0.81[EUR][1000 genomes]
rs9399303	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9399304	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9399305	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9399306	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9399307	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9399308	0.81[EUR][1000 genomes]
rs9403135	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9403138	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403139	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403143	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9403145	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9403146	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9403147	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9403148	0.82[EUR][1000 genomes]
rs9403149	0.82[EUR][1000 genomes]
rs9403150	0.81[EUR][1000 genomes]
rs9403151	0.81[EUR][1000 genomes]
rs9403153	0.81[EUR][1000 genomes]
rs9403156	0.81[EUR][1000 genomes]
rs9403157	0.81[EUR][1000 genomes]
rs9484347	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140339600-140361200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:140351400-140366600	Weak transcription	Aorta	Aorta
3	chr6:140353600-140365600	Weak transcription	Left Ventricle	heart
4	chr6:140355400-140360400	Weak transcription	Placenta	Placenta
5	chr6:140357200-140362400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:140358200-140361200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:140358200-140366600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:140359400-140361200	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:140360000-140361600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr6:140360200-140360800	Enhancers	Primary neutrophils fromperipheralblood	blood

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