Variant report

Variant	rs9399303
Chromosome Location	chr6:140376403-140376404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140375571..140378188-chr6:140378713..140381591,2	K562	blood:
2	chr6:140376182..140378933-chr6:140380636..140382581,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10434888	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12175776	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12662151	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12662747	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12664312	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13191189	0.81[EUR][1000 genomes]
rs1324130	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17069736	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17069768	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2020197	0.82[AFR][1000 genomes]
rs35332737	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35392782	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36074095	0.81[EUR][1000 genomes]
rs36126113	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56044741	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66460448	0.81[EUR][1000 genomes]
rs71562538	0.81[EUR][1000 genomes]
rs72973906	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7763294	0.81[ASN][1000 genomes]
rs9373256	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9373261	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9376485	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9376493	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9376494	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9376495	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9376496	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9376498	0.81[EUR][1000 genomes]
rs9376501	0.88[AFR][1000 genomes]
rs9385895	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9385896	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9385897	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9385899	0.81[EUR][1000 genomes]
rs9385900	0.81[EUR][1000 genomes]
rs9385903	0.81[EUR][1000 genomes]
rs9389741	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9389743	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9389744	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9389745	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389746	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389748	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9389749	0.81[EUR][1000 genomes]
rs9389751	0.88[AFR][1000 genomes]
rs9389755	0.81[EUR][1000 genomes]
rs9389757	0.81[EUR][1000 genomes]
rs9399304	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9399305	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9399306	0.88[ASN][1000 genomes]
rs9399307	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403135	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403138	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403143	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403145	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403146	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9403147	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9403148	0.81[EUR][1000 genomes]
rs9403149	0.81[EUR][1000 genomes]
rs9403157	0.82[AFR][1000 genomes]
rs9403171	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140371600-140379400	Weak transcription	Placenta	Placenta
2	chr6:140373600-140381000	Weak transcription	HSMM	muscle
3	chr6:140373600-140384200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:140373800-140378000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:140374000-140380000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:140374200-140383800	Weak transcription	Fetal Brain Female	brain
7	chr6:140374600-140379400	Weak transcription	Hela-S3	cervix
8	chr6:140374800-140379800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:140374800-140381400	Weak transcription	NHEK	skin
10	chr6:140374800-140382400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:140375000-140377000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:140375000-140380000	Weak transcription	NHDF-Ad	bronchial
13	chr6:140375000-140380200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:140375000-140381400	Weak transcription	NH-A	brain
15	chr6:140375000-140383800	Weak transcription	Brain Germinal Matrix	brain
16	chr6:140375400-140380000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:140375400-140380400	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links