Variant report

Variant	rs9385897
Chromosome Location	chr6:140431078-140431079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 153 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:149)

rs_ID	r²[population]
rs10434888	1.00[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10872525	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1119397	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1121833	0.81[ASN][1000 genomes]
rs12174980	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12175776	0.81[ASN][1000 genomes]
rs12660474	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12660560	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12662046	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12662151	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12662747	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12663480	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12664312	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12665797	0.83[ASN][1000 genomes]
rs13191189	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13204837	1.00[CEU][hapmap]
rs13207048	0.86[ASN][1000 genomes]
rs13215736	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1324130	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1416289	0.85[CEU][hapmap]
rs1496110	0.83[ASN][1000 genomes]
rs1496112	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1496113	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1519592	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1587171	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1603348	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1603349	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17069736	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17069768	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17069852	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17069854	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17192	0.81[ASN][1000 genomes]
rs2020197	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34358600	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34753441	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34984534	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35332737	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35392782	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35461592	0.84[EUR][1000 genomes]
rs35465283	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36074095	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36126113	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4637665	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56044741	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62431097	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62431100	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62431101	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66460448	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71562538	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs724061	0.90[CEU][hapmap]
rs72973906	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7758187	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7761894	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7763294	0.87[CHB][hapmap]
rs9321765	0.83[ASN][1000 genomes]
rs9373256	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9373258	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9373259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9373260	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9373261	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9373262	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9373266	0.83[ASN][1000 genomes]
rs9373267	0.81[ASN][1000 genomes]
rs9373269	0.81[ASN][1000 genomes]
rs9373270	0.81[ASN][1000 genomes]
rs9376485	0.82[EUR][1000 genomes]
rs9376493	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9376494	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9376495	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376496	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9376497	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9376498	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9376500	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9376501	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9376502	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9376503	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9376504	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9376506	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9376511	0.81[ASN][1000 genomes]
rs9376512	0.81[ASN][1000 genomes]
rs9385895	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9385896	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9385899	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9385900	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9385901	0.86[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9385902	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9385903	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9385906	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389733	0.94[CEU][hapmap]
rs9389741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9389743	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9389744	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9389745	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9389746	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9389748	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9389749	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9389750	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9389751	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9389753	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389754	0.86[ASN][1000 genomes]
rs9389755	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389757	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389758	0.84[EUR][1000 genomes]
rs9389760	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389763	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389767	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389768	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389772	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9389773	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9389774	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9389775	0.82[EUR][1000 genomes]
rs9389776	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389777	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389780	0.83[ASN][1000 genomes]
rs9389781	0.83[ASN][1000 genomes]
rs9389782	0.82[ASN][1000 genomes]
rs9389783	0.81[ASN][1000 genomes]
rs9389784	0.81[ASN][1000 genomes]
rs9389785	0.81[ASN][1000 genomes]
rs9399298	0.94[CEU][hapmap]
rs9399303	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9399304	0.94[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9399305	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9399306	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9399307	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9399310	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403134	0.94[CEU][hapmap]
rs9403135	0.82[EUR][1000 genomes]
rs9403138	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403139	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403143	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403146	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403147	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403148	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403149	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9403150	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403151	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403153	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403155	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403156	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403157	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403159	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403165	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9403168	0.82[ASN][1000 genomes]
rs9403170	0.81[ASN][1000 genomes]
rs9403171	0.81[ASN][1000 genomes]
rs9484347	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140427400-140436000	Weak transcription	Placenta	Placenta
2	chr6:140430600-140431600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:140430800-140431400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:140430800-140431400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:140431000-140431200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:140431000-140431400	Enhancers	Fetal Brain Female	brain
7	chr6:140431000-140431600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:140431000-140431600	Enhancers	Brain Germinal Matrix	brain

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