Variant report

Variant	rs13215736
Chromosome Location	chr6:140449286-140449287
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs1119397	0.81[ASN][1000 genomes]
rs12174980	0.81[ASN][1000 genomes]
rs12662151	0.83[ASN][1000 genomes]
rs12663480	0.81[ASN][1000 genomes]
rs12664312	0.90[ASN][1000 genomes]
rs13191189	0.84[ASN][1000 genomes]
rs13207048	0.81[ASN][1000 genomes]
rs1324130	0.84[ASN][1000 genomes]
rs1496112	0.81[ASN][1000 genomes]
rs1496113	0.81[ASN][1000 genomes]
rs1519592	0.81[ASN][1000 genomes]
rs1587171	0.81[ASN][1000 genomes]
rs1603348	0.81[ASN][1000 genomes]
rs1603349	0.81[ASN][1000 genomes]
rs17069768	0.90[ASN][1000 genomes]
rs17069852	0.81[ASN][1000 genomes]
rs17069854	0.81[ASN][1000 genomes]
rs2020197	0.82[ASN][1000 genomes]
rs34358600	0.85[ASN][1000 genomes]
rs34753441	0.81[ASN][1000 genomes]
rs34984534	0.81[ASN][1000 genomes]
rs35332737	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35392782	0.83[ASN][1000 genomes]
rs35465283	0.81[ASN][1000 genomes]
rs36074095	0.81[ASN][1000 genomes]
rs4637665	0.81[ASN][1000 genomes]
rs56044741	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62431097	0.85[ASN][1000 genomes]
rs62431101	0.81[ASN][1000 genomes]
rs66460448	0.86[ASN][1000 genomes]
rs72973906	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7758187	0.84[ASN][1000 genomes]
rs7761894	0.85[ASN][1000 genomes]
rs9373256	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9373258	0.85[ASN][1000 genomes]
rs9373259	0.84[ASN][1000 genomes]
rs9373260	0.81[ASN][1000 genomes]
rs9373261	0.81[ASN][1000 genomes]
rs9373262	0.81[ASN][1000 genomes]
rs9376493	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9376494	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9376495	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9376496	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9376497	0.85[ASN][1000 genomes]
rs9376498	0.85[ASN][1000 genomes]
rs9376502	0.81[ASN][1000 genomes]
rs9376503	0.81[ASN][1000 genomes]
rs9376504	0.81[ASN][1000 genomes]
rs9385895	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9385896	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9385897	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9385899	0.86[ASN][1000 genomes]
rs9385900	0.85[ASN][1000 genomes]
rs9385901	0.84[ASN][1000 genomes]
rs9385902	0.84[ASN][1000 genomes]
rs9385903	0.81[ASN][1000 genomes]
rs9385906	0.81[ASN][1000 genomes]
rs9389741	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9389743	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9389744	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9389745	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9389746	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9389748	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9389749	0.85[ASN][1000 genomes]
rs9389750	0.85[ASN][1000 genomes]
rs9389751	0.84[ASN][1000 genomes]
rs9389753	0.81[ASN][1000 genomes]
rs9389754	0.81[ASN][1000 genomes]
rs9389755	0.81[ASN][1000 genomes]
rs9389757	0.81[ASN][1000 genomes]
rs9389760	0.81[ASN][1000 genomes]
rs9389763	0.81[ASN][1000 genomes]
rs9389767	0.81[ASN][1000 genomes]
rs9389768	0.81[ASN][1000 genomes]
rs9389776	0.81[ASN][1000 genomes]
rs9389777	0.81[ASN][1000 genomes]
rs9399304	0.81[ASN][1000 genomes]
rs9399305	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9399306	0.89[ASN][1000 genomes]
rs9399307	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9399308	0.85[ASN][1000 genomes]
rs9399310	0.81[ASN][1000 genomes]
rs9403143	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9403145	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9403146	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9403147	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9403148	0.84[ASN][1000 genomes]
rs9403150	0.81[ASN][1000 genomes]
rs9403151	0.81[ASN][1000 genomes]
rs9403153	0.81[ASN][1000 genomes]
rs9403155	0.81[ASN][1000 genomes]
rs9403156	0.81[ASN][1000 genomes]
rs9403157	0.81[ASN][1000 genomes]
rs9403159	0.81[ASN][1000 genomes]
rs9484347	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140444000-140460800	Weak transcription	K562	blood
2	chr6:140446000-140449400	Weak transcription	Pancreas	Pancrea
3	chr6:140447800-140449400	Weak transcription	Placenta	Placenta
4	chr6:140448200-140453600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:140448800-140451200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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