Variant report

Variant	rs9389746
Chromosome Location	chr6:140427532-140427533
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139694452..139697166-chr6:140425790..140427794,2	K562	blood:
2	chr6:140426160..140428952-chr6:140431227..140433652,3	K562	blood:
3	chr6:140426300..140428252-chr6:140459714..140462251,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs10434888	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10872525	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1119397	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1121833	0.81[ASN][1000 genomes]
rs12174980	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12175776	0.81[ASN][1000 genomes]
rs12660474	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12660560	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12662046	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12662151	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12662747	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12662848	0.81[EUR][1000 genomes]
rs12663480	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12664312	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12665797	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13191189	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13194271	0.81[EUR][1000 genomes]
rs13207048	0.86[ASN][1000 genomes]
rs13215736	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1324130	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1496110	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1496112	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1496113	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1519592	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1587171	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1603348	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1603349	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17069736	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17069768	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17069852	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17069854	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17192	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2020197	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34358600	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34753441	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34984534	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35332737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35392782	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35461592	0.85[EUR][1000 genomes]
rs35465283	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36074095	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36126113	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4637665	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56044741	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62431097	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62431100	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62431101	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66460448	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71562538	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72973906	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7758187	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7761894	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9321765	0.83[ASN][1000 genomes]
rs9373256	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9373258	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9373259	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9373260	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9373261	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9373262	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9373266	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9373267	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9373269	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9373270	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9376485	0.81[EUR][1000 genomes]
rs9376493	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9376494	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9376495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376496	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9376497	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9376498	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9376500	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9376501	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9376502	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9376503	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9376504	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9376506	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9376511	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9376512	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9385895	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9385896	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9385897	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385899	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9385900	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9385901	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9385902	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9385903	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9385906	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389741	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9389743	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9389744	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9389745	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9389748	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9389749	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9389750	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9389751	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9389753	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389754	0.86[ASN][1000 genomes]
rs9389755	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389757	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389758	0.85[EUR][1000 genomes]
rs9389760	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389763	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389767	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389768	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389772	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9389773	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9389774	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9389775	0.83[EUR][1000 genomes]
rs9389776	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389777	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389780	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9389781	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9389782	0.82[ASN][1000 genomes]
rs9389783	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9389784	0.81[ASN][1000 genomes]
rs9389785	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9399303	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9399304	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9399305	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9399306	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9399307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399308	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9399310	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403135	0.81[EUR][1000 genomes]
rs9403138	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403139	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403143	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403145	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403146	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403147	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403148	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403149	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9403150	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403151	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403153	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403155	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403156	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403157	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403159	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403165	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9403168	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9403170	0.81[ASN][1000 genomes]
rs9403171	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9484347	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140423200-140428200	Weak transcription	Fetal Heart	heart
2	chr6:140426400-140428600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:140426400-140428800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:140426600-140427600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr6:140426600-140428000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:140426600-140428200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:140426800-140428200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:140426800-140431000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:140426800-140431000	Weak transcription	Brain Germinal Matrix	brain
10	chr6:140426800-140431000	Weak transcription	Fetal Brain Female	brain
11	chr6:140427000-140427600	Enhancers	NHEK	skin
12	chr6:140427000-140428200	Weak transcription	Aorta	Aorta
13	chr6:140427200-140428200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:140427200-140428400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr6:140427200-140428400	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:140427400-140428200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:140427400-140428400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:140427400-140431000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:140427400-140436000	Weak transcription	Placenta	Placenta

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