Variant report

Variant	rs7743941
Chromosome Location	chr6:14760185-14760186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14758282..14761155-chr6:15248011..15249696,2	MCF-7	breast:
2	chr6:14753089..14756082-chr6:14758118..14760914,2	K562	blood:
3	chr6:14744177..14745935-chr6:14757956..14760558,2	MCF-7	breast:
4	chr6:14751271..14756059-chr6:14756361..14761159,4	K562	blood:
5	chr6:14757827..14760389-chr6:14950960..14952812,2	MCF-7	breast:
6	chr6:14758724..14760545-chr6:14765666..14768549,2	K562	blood:

Variant related genes	Relation type
ENSG00000235488	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1010703	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1010704	0.84[EUR][1000 genomes]
rs1010705	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2038016	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2472790	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2472791	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2472792	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2472793	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2472797	1.00[ASN][1000 genomes]
rs2472798	1.00[ASN][1000 genomes]
rs2500066	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2500067	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2500068	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2500070	0.85[EUR][1000 genomes]
rs2500071	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2500074	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2500075	0.85[EUR][1000 genomes]
rs2500076	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2500077	0.86[EUR][1000 genomes]
rs2500078	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2500079	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145445	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4145447	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4145448	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4712240	0.86[EUR][1000 genomes]
rs4715922	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6459373	0.86[EUR][1000 genomes]
rs6459374	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6459375	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6903582	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6935110	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7744561	0.86[EUR][1000 genomes]
rs7766310	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs926242	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370778	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9382996	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9382999	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9383000	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9396530	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9396531	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9464714	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462641	chr6:14203872-14764983	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv600997	chr6:14203872-14764983	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14743600-14767400	Weak transcription	Right Atrium	heart
2	chr6:14745000-14762800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:14756000-14761000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:14758200-14764200	Enhancers	Liver	Liver
5	chr6:14758400-14760800	Weak transcription	Small Intestine	intestine
6	chr6:14758400-14764600	Enhancers	Fetal Intestine Large	intestine
7	chr6:14758600-14760400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:14758600-14760800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr6:14758600-14762000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr6:14758800-14766800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:14759000-14760600	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr6:14759000-14763400	Weak transcription	Stomach Mucosa	stomach
13	chr6:14759200-14760200	Weak transcription	Primary B cells from cord blood	blood
14	chr6:14759200-14760200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:14759200-14761000	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr6:14759200-14762800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:14759200-14762800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:14759200-14763200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:14759200-14763200	Weak transcription	Hela-S3	cervix
20	chr6:14759200-14764400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:14759200-14767800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:14759600-14760200	Weak transcription	Placenta	Placenta
23	chr6:14759600-14762800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:14759600-14762800	Weak transcription	HMEC	breast
25	chr6:14759600-14762800	Weak transcription	NHEK	skin
26	chr6:14759600-14764400	Enhancers	Fetal Intestine Small	intestine
27	chr6:14759800-14762800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:14759800-14762800	Weak transcription	A549	lung

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