Variant report

Variant	rs926242
Chromosome Location	chr6:14762428-14762429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:14762299..14764656-chr6:15088901..15090764,2	MCF-7	breast:
2	chr6:14762038..14763627-chr6:14854047..14856910,2	MCF-7	breast:
3	chr6:14761235..14763388-chr6:14768034..14770396,2	K562	blood:
4	chr6:14762306..14764528-chr6:14766807..14769231,2	K562	blood:
5	chr6:14761733..14764383-chr6:14771146..14773076,2	K562	blood:
6	chr6:14743112..14746025-chr6:14761526..14763688,5	MCF-7	breast:
7	chr6:14762315..14764883-chr6:15247297..15249027,2	MCF-7	breast:
8	chr6:14756302..14759607-chr6:14761530..14763562,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000235488	Chromatin interaction
ENSG00000234261	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1010703	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1010704	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1010705	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2038016	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2038017	1.00[JPT][hapmap]
rs2472789	1.00[JPT][hapmap]
rs2472790	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2472791	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2472792	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2472793	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2472794	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2472797	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2472798	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2500066	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2500067	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2500068	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2500070	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2500071	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2500074	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2500075	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2500076	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2500077	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2500078	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2500079	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145445	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs4145447	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4145448	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4712240	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4715922	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6459373	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.94[TSI][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6459374	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6459375	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6903582	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6919669	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6935110	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs742039	0.90[MEX][hapmap]
rs7743941	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744561	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7766310	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs9370778	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9382996	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9382999	0.89[EUR][1000 genomes]
rs9383000	0.89[EUR][1000 genomes]
rs9396530	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9396531	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9464714	0.89[EUR][1000 genomes]
rs9476648	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462641	chr6:14203872-14764983	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv600997	chr6:14203872-14764983	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14743600-14767400	Weak transcription	Right Atrium	heart
2	chr6:14745000-14762800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:14758200-14764200	Enhancers	Liver	Liver
4	chr6:14758400-14764600	Enhancers	Fetal Intestine Large	intestine
5	chr6:14758800-14766800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:14759000-14763400	Weak transcription	Stomach Mucosa	stomach
7	chr6:14759200-14762800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:14759200-14762800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:14759200-14763200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:14759200-14763200	Weak transcription	Hela-S3	cervix
11	chr6:14759200-14764400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:14759200-14767800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:14759600-14762800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:14759600-14762800	Weak transcription	HMEC	breast
15	chr6:14759600-14762800	Weak transcription	NHEK	skin
16	chr6:14759600-14764400	Enhancers	Fetal Intestine Small	intestine
17	chr6:14759800-14762800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:14759800-14762800	Weak transcription	A549	lung
19	chr6:14760400-14772400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:14760800-14762800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr6:14760800-14765400	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr6:14761000-14765200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr6:14761000-14766000	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr6:14761800-14762600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:14762000-14763600	Enhancers	K562	blood
26	chr6:14762000-14764200	Enhancers	HepG2	liver
27	chr6:14762200-14762600	Weak transcription	Placenta	Placenta
28	chr6:14762200-14762600	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr6:14762200-14764200	Enhancers	Small Intestine	intestine
30	chr6:14762400-14763000	Enhancers	Adipose Nuclei	Adipose
31	chr6:14762400-14764200	Enhancers	Duodenum Mucosa	Duodenum

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