Variant report

Variant	rs7744297
Chromosome Location	chr6:133049234-133049235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11970650	1.00[EUR][1000 genomes]
rs12208948	1.00[EUR][1000 genomes]
rs6569829	0.82[AFR][1000 genomes]
rs6569830	1.00[EUR][1000 genomes]
rs6569833	0.86[AFR][1000 genomes]
rs6569834	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907020	1.00[EUR][1000 genomes]
rs9483495	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133034800-133053200	Weak transcription	Placenta	Placenta
2	chr6:133038000-133053400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:133043200-133050000	Strong transcription	Liver	Liver
4	chr6:133043200-133051200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:133043600-133051600	Weak transcription	HepG2	liver
6	chr6:133044400-133052000	Weak transcription	Primary B cells from cord blood	blood
7	chr6:133044400-133066200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:133046000-133051600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:133046400-133051800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:133048400-133052400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:133048800-133050000	Enhancers	Stomach Mucosa	stomach
12	chr6:133049000-133049400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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