Variant report

Variant	rs6569833
Chromosome Location	chr6:133046843-133046844
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133045534..133047240-chr6:133133857..133135793,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112306	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12209262	0.86[ASN][1000 genomes]
rs12661111	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12661388	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12663367	0.90[ASN][1000 genomes]
rs12663385	0.90[ASN][1000 genomes]
rs12663711	0.90[ASN][1000 genomes]
rs34045817	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34171909	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34265099	0.90[ASN][1000 genomes]
rs34454463	0.90[ASN][1000 genomes]
rs34625012	0.86[ASN][1000 genomes]
rs34696126	0.90[ASN][1000 genomes]
rs34923036	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35296403	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35850139	0.83[EUR][1000 genomes]
rs35954051	0.90[ASN][1000 genomes]
rs36012859	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36031989	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36100139	0.89[ASN][1000 genomes]
rs45447895	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs45460092	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45466492	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs45471497	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45528534	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs45530934	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55712210	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55858629	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6569829	0.96[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6569834	0.85[AFR][1000 genomes]
rs72994242	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72994245	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72994261	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72994262	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72994267	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72994294	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72996105	0.89[ASN][1000 genomes]
rs7744297	0.86[AFR][1000 genomes]
rs7745094	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7756638	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7762946	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7762954	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7774124	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7774366	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9321366	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9483495	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483499	0.86[ASN][1000 genomes]
rs9493421	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9493422	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9493427	0.86[ASN][1000 genomes]
rs9689389	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133034800-133053200	Weak transcription	Placenta	Placenta
2	chr6:133038000-133053400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:133041800-133048400	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:133043000-133047800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:133043200-133050000	Strong transcription	Liver	Liver
6	chr6:133043200-133051200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr6:133043600-133051600	Weak transcription	HepG2	liver
8	chr6:133044400-133052000	Weak transcription	Primary B cells from cord blood	blood
9	chr6:133044400-133066200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:133046000-133047000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:133046000-133051600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:133046400-133051800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:133046800-133048200	Enhancers	GM12878-XiMat	blood

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