Variant report

Variant	rs9689389
Chromosome Location	chr6:133041596-133041597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12661388	0.80[EUR][1000 genomes]
rs36012859	0.80[EUR][1000 genomes]
rs45447895	0.80[EUR][1000 genomes]
rs45460092	0.80[EUR][1000 genomes]
rs45466492	0.80[EUR][1000 genomes]
rs45471497	0.80[EUR][1000 genomes]
rs45530934	0.80[EUR][1000 genomes]
rs6569829	0.85[AFR][1000 genomes]
rs6569833	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9483495	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9493421	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133034800-133053200	Weak transcription	Placenta	Placenta
2	chr6:133035400-133044200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:133037600-133041800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:133037600-133043200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:133037600-133043200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:133038000-133042000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:133038000-133053400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:133038200-133041800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:133040200-133043600	Enhancers	HepG2	liver
10	chr6:133041200-133043200	Weak transcription	Liver	Liver
11	chr6:133041400-133042800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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