Variant report

Variant	rs12661388
Chromosome Location	chr6:133043198-133043199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133041781..133043752-chr6:133068692..133070309,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12209262	0.90[CHB][hapmap];0.88[CHD][hapmap];0.84[ASN][1000 genomes]
rs12661111	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12663367	1.00[CEU][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12663385	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12663711	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34045817	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34171909	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34265099	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34454463	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34625012	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34696126	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34923036	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35296403	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35850139	0.94[EUR][1000 genomes]
rs35954051	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36012859	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36031989	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36100139	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs45447895	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs45460092	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs45466492	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs45471497	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs45528534	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs45530934	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55712210	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55858629	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6569829	0.90[ASN][1000 genomes]
rs6569833	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72994242	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72994245	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72994261	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72994262	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72994267	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72994294	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72996105	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7745094	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7756638	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7762946	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7762954	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7774124	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7774366	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9321366	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9483495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9483499	0.90[CHB][hapmap];0.88[CHD][hapmap];0.84[ASN][1000 genomes]
rs9493421	0.89[ASN][1000 genomes]
rs9493422	1.00[CEU][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9493427	0.84[ASN][1000 genomes]
rs9689389	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133034800-133053200	Weak transcription	Placenta	Placenta
2	chr6:133035400-133044200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:133037600-133043200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:133037600-133043200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:133038000-133053400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:133040200-133043600	Enhancers	HepG2	liver
7	chr6:133041200-133043200	Weak transcription	Liver	Liver
8	chr6:133041800-133044000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:133041800-133048400	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:133042600-133045800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:133043000-133045600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:133043000-133047800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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