Variant report

Variant	rs9321366
Chromosome Location	chr6:133070136-133070137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:133070128-133070657	HCT-116	colon:	n/a	n/a
2	FOXA1	chr6:133070128-133070550	HepG2	liver:	n/a	chr6:133070141-133070153

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133041781..133043752-chr6:133068692..133070309,2	K562	blood:

Variant related genes	Relation type
ENSG00000234484	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12209262	0.95[ASN][1000 genomes]
rs12661111	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12661388	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12663367	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12663385	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12663711	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34045817	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34171909	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34265099	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34454463	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34625012	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34696126	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34923036	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35296403	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35850139	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35954051	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36012859	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36031989	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36100139	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs45447895	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45460092	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs45466492	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45471497	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs45528534	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs45530934	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55712210	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55858629	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569833	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72992354	0.94[AMR][1000 genomes]
rs72994242	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72994245	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72994261	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994262	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994267	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994294	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72996105	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7745094	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756638	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7762946	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762954	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774124	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7774366	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9483495	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9483499	0.95[ASN][1000 genomes]
rs9493421	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493422	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493427	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv517934	chr6:133062916-133072650	Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3692914	chr6:133067733-133070995	Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133058400-133070400	Weak transcription	Liver	Liver
2	chr6:133061400-133098000	Weak transcription	Spleen	Spleen
3	chr6:133061600-133072200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr6:133062600-133070400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:133063600-133072200	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:133064200-133072000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:133064200-133083000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:133064600-133070400	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr6:133064800-133070200	Strong transcription	Primary B cells from peripheral blood	blood
10	chr6:133064800-133078000	Strong transcription	Primary T cells from cord blood	blood
11	chr6:133065000-133098000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:133065400-133073800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:133066800-133070400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:133067800-133071600	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
15	chr6:133068000-133070400	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr6:133068800-133070400	Weak transcription	Placenta	Placenta
17	chr6:133068800-133070600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:133068800-133083200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr6:133069000-133070400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr6:133069600-133083200	Weak transcription	Thymus	Thymus
21	chr6:133069800-133070400	Active TSS	Primary B cells from cord blood	blood
22	chr6:133069800-133075200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:133070000-133071200	Genic enhancers	GM12878-XiMat	blood
24	chr6:133070000-133072000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:133070000-133072000	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr6:133070000-133072200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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