Variant report

Variant	rs7744869
Chromosome Location	chr6:121556457-121556458
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1290712	1.00[AMR][1000 genomes]
rs1776805	1.00[AMR][1000 genomes]
rs218849	1.00[AMR][1000 genomes]
rs218868	1.00[AMR][1000 genomes]
rs367518	1.00[AMR][1000 genomes]
rs413998	1.00[AMR][1000 genomes]
rs7772508	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv3333350	chr6:121556253-121560051	Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121509600-121575400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:121516000-121560200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:121533000-121566800	Weak transcription	Stomach Mucosa	stomach
4	chr6:121535000-121569200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr6:121536200-121567200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:121536600-121556600	Weak transcription	Left Ventricle	heart
7	chr6:121536600-121558400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:121536600-121566000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:121536600-121568200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:121536600-121585400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:121536800-121556600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:121536800-121565600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr6:121536800-121566000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:121536800-121566000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:121536800-121566000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:121536800-121584400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:121537000-121584600	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:121537200-121562400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:121537400-121556600	Weak transcription	Right Ventricle	heart
20	chr6:121537400-121567800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr6:121538200-121565800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:121538200-121567000	Weak transcription	Primary B cells from peripheral blood	blood
23	chr6:121539200-121567600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr6:121539400-121562200	Weak transcription	Fetal Kidney	kidney
25	chr6:121539400-121563200	Weak transcription	Brain Substantia Nigra	brain
26	chr6:121540400-121567800	Weak transcription	Adipose Nuclei	Adipose
27	chr6:121541200-121585000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr6:121544400-121581600	Weak transcription	HSMM	muscle
29	chr6:121544800-121581400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:121549800-121556600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr6:121552600-121561800	Weak transcription	Fetal Brain Male	brain
32	chr6:121552600-121569200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:121552800-121566000	Weak transcription	Gastric	stomach
34	chr6:121552800-121567800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr6:121553200-121559000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr6:121553600-121556600	Weak transcription	HSMMtube	muscle
37	chr6:121553800-121557800	Weak transcription	Fetal Thymus	thymus
38	chr6:121554200-121568000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr6:121554600-121556600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:121554800-121567000	Weak transcription	Placenta	Placenta
41	chr6:121555000-121556600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr6:121555000-121567200	Weak transcription	Colonic Mucosa	Colon
43	chr6:121555200-121557600	Weak transcription	A549	lung
44	chr6:121555600-121556600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:121555600-121558000	Weak transcription	Fetal Brain Female	brain
46	chr6:121555600-121567600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr6:121555600-121568000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr6:121555800-121557000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:121555800-121557000	Strong transcription	Fetal Intestine Large	intestine
50	chr6:121556000-121556600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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