Variant report

Variant	rs7772508
Chromosome Location	chr6:121436422-121436423
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10499105	1.00[CHB][hapmap]
rs11505181	0.88[AFR][1000 genomes]
rs12525337	1.00[CHB][hapmap]
rs1273708	0.88[AFR][1000 genomes]
rs1273709	0.88[AFR][1000 genomes]
rs1273727	1.00[AFR][1000 genomes]
rs1273747	0.88[AFR][1000 genomes]
rs1273757	1.00[CHB][hapmap]
rs1273759	1.00[CHB][hapmap]
rs1273760	1.00[CHB][hapmap]
rs1273767	0.88[AFR][1000 genomes]
rs1289973	1.00[AFR][1000 genomes]
rs1289975	0.88[AFR][1000 genomes]
rs1290712	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1697446	1.00[CHB][hapmap]
rs17083387	1.00[CHB][hapmap]
rs17083393	1.00[CHB][hapmap]
rs1776805	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2133993	1.00[CHB][hapmap]
rs2173837	1.00[CHB][hapmap]
rs2173838	1.00[CHB][hapmap]
rs218849	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs218868	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs367518	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs413998	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4255016	0.88[AFR][1000 genomes]
rs4257888	1.00[CHB][hapmap]
rs4371869	0.88[AFR][1000 genomes]
rs4527742	1.00[CHB][hapmap]
rs4585603	1.00[CHB][hapmap]
rs4607467	0.88[AFR][1000 genomes]
rs4945681	1.00[CHB][hapmap]
rs4946540	1.00[CHB][hapmap]
rs4946548	1.00[CHB][hapmap]
rs4946551	1.00[CHB][hapmap]
rs6420716	0.88[AFR][1000 genomes]
rs6569179	1.00[CHB][hapmap]
rs6569182	1.00[CHB][hapmap]
rs6569193	0.88[AFR][1000 genomes]
rs6912500	1.00[CHB][hapmap]
rs6916425	1.00[CHB][hapmap]
rs6933263	1.00[CHB][hapmap]
rs6933489	1.00[CHB][hapmap]
rs6935039	1.00[CHB][hapmap]
rs7744869	1.00[AMR][1000 genomes]
rs7755286	0.88[AFR][1000 genomes]
rs7762181	1.00[CHB][hapmap]
rs7762977	1.00[CHB][hapmap]
rs7765698	0.88[AFR][1000 genomes]
rs785396	1.00[AFR][1000 genomes]
rs796771	1.00[AFR][1000 genomes]
rs810826	1.00[CHB][hapmap]
rs811484	1.00[CHB][hapmap]
rs813068	1.00[CHB][hapmap]
rs9372653	0.88[AFR][1000 genomes]
rs9385188	1.00[CHB][hapmap]
rs9387944	0.88[AFR][1000 genomes]
rs9398614	1.00[AMR][1000 genomes]
rs9401386	0.88[AFR][1000 genomes]
rs9401392	0.88[AFR][1000 genomes]
rs9482126	0.88[AFR][1000 genomes]
rs9482127	0.88[AFR][1000 genomes]
rs9482128	0.88[AFR][1000 genomes]
rs9482129	0.88[AFR][1000 genomes]
rs9490139	0.88[AFR][1000 genomes]
rs9490144	0.88[AFR][1000 genomes]
rs9490145	0.88[AFR][1000 genomes]
rs9490150	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1812259	chr6:121404112-121451095	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121390800-121444000	Weak transcription	Ovary	ovary
2	chr6:121403600-121443400	Weak transcription	Left Ventricle	heart
3	chr6:121411800-121443000	Weak transcription	Primary T cells from cord blood	blood
4	chr6:121415400-121442200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:121418000-121442200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:121418200-121443800	Weak transcription	Dnd41	blood
7	chr6:121418600-121446200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:121419800-121446200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:121426600-121445200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:121429600-121455600	Weak transcription	Brain Substantia Nigra	brain
11	chr6:121432600-121444000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr6:121433000-121445200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:121433800-121446200	Weak transcription	Pancreas	Pancrea
14	chr6:121434400-121442400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:121436000-121443000	Weak transcription	Primary B cells from cord blood	blood
16	chr6:121436200-121442400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:121436400-121445600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links