Variant report

Variant	rs1289973
Chromosome Location	chr6:121450640-121450641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121449170..121450755-chr6:121455147..121457619,2	MCF-7	breast:
2	chr6:119886303..119888450-chr6:121450603..121452607,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11505181	0.88[AFR][1000 genomes]
rs1273708	0.88[AFR][1000 genomes]
rs1273709	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs1273727	1.00[AFR][1000 genomes]
rs1273747	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs1273767	0.88[AFR][1000 genomes]
rs1289975	0.88[AFR][1000 genomes]
rs1290712	0.88[AFR][1000 genomes]
rs1776805	0.88[AFR][1000 genomes]
rs218849	0.82[AFR][1000 genomes]
rs218868	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs367518	0.88[AFR][1000 genomes]
rs413998	0.88[AFR][1000 genomes]
rs4255016	0.88[AFR][1000 genomes]
rs4299866	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs4318918	1.00[YRI][hapmap]
rs4371869	0.88[AFR][1000 genomes]
rs4607467	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs6420716	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs6569193	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs6569196	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7755286	0.88[AFR][1000 genomes]
rs7765698	0.88[AFR][1000 genomes]
rs7772508	1.00[AFR][1000 genomes]
rs785396	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs796771	1.00[AFR][1000 genomes]
rs9372653	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9385195	1.00[YRI][hapmap]
rs9387944	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9401386	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9401392	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9482126	0.88[AFR][1000 genomes]
rs9482127	0.88[AFR][1000 genomes]
rs9482128	0.88[AFR][1000 genomes]
rs9482129	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9490139	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9490144	0.88[AFR][1000 genomes]
rs9490145	0.88[AFR][1000 genomes]
rs9490150	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1812259	chr6:121404112-121451095	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121429600-121455600	Weak transcription	Brain Substantia Nigra	brain
2	chr6:121446800-121464600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:121447000-121451000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:121447000-121455600	Weak transcription	Aorta	Aorta
5	chr6:121447000-121463200	Weak transcription	Ovary	ovary
6	chr6:121447200-121451400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:121447200-121451400	Weak transcription	Fetal Kidney	kidney
8	chr6:121447200-121451600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:121447200-121451600	Weak transcription	Placenta	Placenta
10	chr6:121447200-121451800	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:121447200-121452600	Weak transcription	Brain Angular Gyrus	brain
12	chr6:121447200-121455400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:121447200-121455400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:121447200-121463000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:121447200-121463200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:121447200-121465000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:121447200-121473800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr6:121447200-121474200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:121447200-121475000	Weak transcription	Primary B cells from cord blood	blood
20	chr6:121447400-121451600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr6:121447400-121451800	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr6:121447400-121474200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:121447600-121453400	Weak transcription	Dnd41	blood
24	chr6:121447600-121473200	Weak transcription	Primary T cells from cord blood	blood
25	chr6:121447800-121465000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:121448200-121454600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:121450000-121451000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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