Variant report

Variant	rs9482129
Chromosome Location	chr6:121588468-121588469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11505181	1.00[AFR][1000 genomes]
rs1273708	1.00[AFR][1000 genomes]
rs1273709	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1273727	0.88[AFR][1000 genomes]
rs1273747	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1273767	1.00[AFR][1000 genomes]
rs1289973	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs1289975	1.00[AFR][1000 genomes]
rs4255016	1.00[AFR][1000 genomes]
rs4299866	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4318918	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs4371869	1.00[AFR][1000 genomes]
rs4506065	1.00[AFR][1000 genomes]
rs4607467	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6420716	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6569193	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6569196	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7740477	1.00[AFR][1000 genomes]
rs7755286	1.00[AFR][1000 genomes]
rs7765698	1.00[AFR][1000 genomes]
rs7772508	0.88[AFR][1000 genomes]
rs785396	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs796771	0.88[AFR][1000 genomes]
rs9372653	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9385195	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9387944	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9401386	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9401392	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9482126	1.00[AFR][1000 genomes]
rs9482127	1.00[AFR][1000 genomes]
rs9482128	1.00[AFR][1000 genomes]
rs9482136	1.00[YRI][hapmap]
rs9490139	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9490144	1.00[AFR][1000 genomes]
rs9490145	1.00[AFR][1000 genomes]
rs9490150	0.94[AFR][1000 genomes]
rs9490163	1.00[AFR][1000 genomes]
rs9490167	1.00[AFR][1000 genomes]
rs9490170	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121575000-121606400	Weak transcription	NH-A	brain
2	chr6:121581000-121589200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:121582000-121589000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:121582200-121603400	Weak transcription	HSMMtube	muscle
5	chr6:121582400-121590400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:121585400-121590400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr6:121585400-121614200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:121585600-121588800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:121585600-121625000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:121585800-121599000	Weak transcription	Primary B cells from cord blood	blood
11	chr6:121586400-121655000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:121586600-121613000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:121587800-121589000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:121587800-121589000	ZNF genes & repeats	Ovary	ovary
15	chr6:121587800-121589200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:121587800-121589200	ZNF genes & repeats	Fetal Intestine Small	intestine
17	chr6:121588000-121588600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:121588000-121588600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
19	chr6:121588000-121588800	ZNF genes & repeats	Aorta	Aorta
20	chr6:121588000-121589000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:121588000-121589000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
22	chr6:121588000-121589000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
23	chr6:121588000-121589200	ZNF genes & repeats	Placenta	Placenta
24	chr6:121588000-121589200	ZNF genes & repeats	Fetal Stomach	stomach
25	chr6:121588000-121589200	ZNF genes & repeats	Pancreas	Pancrea
26	chr6:121588200-121588600	ZNF genes & repeats	Fetal Intestine Large	intestine
27	chr6:121588200-121588800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:121588200-121589000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
29	chr6:121588200-121589200	ZNF genes & repeats	Lung	lung
30	chr6:121588200-121589200	ZNF genes & repeats	Dnd41	blood
31	chr6:121588200-121589400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr6:121588200-121592000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:121588200-121616800	Weak transcription	Primary T cells from cord blood	blood
34	chr6:121588400-121588600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
35	chr6:121588400-121588600	ZNF genes & repeats	Gastric	stomach
36	chr6:121588400-121588800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:121588400-121588800	ZNF genes & repeats	Left Ventricle	heart
38	chr6:121588400-121589000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:121588400-121589000	ZNF genes & repeats	Brain Hippocampus Middle	brain
40	chr6:121588400-121589000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
41	chr6:121588400-121589000	ZNF genes & repeats	Fetal Lung	lung
42	chr6:121588400-121589200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:121588400-121589600	ZNF genes & repeats	Fetal Brain Female	brain
44	chr6:121588400-121590600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
45	chr6:121588400-121655200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links