Variant report

Variant	rs1273709
Chromosome Location	chr6:121467865-121467866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11505181	1.00[AFR][1000 genomes]
rs1273708	1.00[AFR][1000 genomes]
rs1273727	0.88[AFR][1000 genomes]
rs1273747	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1273767	1.00[AFR][1000 genomes]
rs1289973	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs1289975	1.00[AFR][1000 genomes]
rs4255016	1.00[AFR][1000 genomes]
rs4299866	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4318918	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs4371869	1.00[AFR][1000 genomes]
rs4506065	1.00[AFR][1000 genomes]
rs4607467	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6420716	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6569193	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6569196	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7740477	1.00[AFR][1000 genomes]
rs7755286	1.00[AFR][1000 genomes]
rs7765698	1.00[AFR][1000 genomes]
rs7772508	0.88[AFR][1000 genomes]
rs785396	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs796771	0.88[AFR][1000 genomes]
rs9372653	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9385195	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9387944	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9401386	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9401392	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9482126	1.00[AFR][1000 genomes]
rs9482127	1.00[AFR][1000 genomes]
rs9482128	1.00[AFR][1000 genomes]
rs9482129	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9482136	1.00[YRI][hapmap]
rs9490139	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9490144	1.00[AFR][1000 genomes]
rs9490145	1.00[AFR][1000 genomes]
rs9490150	0.94[AFR][1000 genomes]
rs9490163	1.00[AFR][1000 genomes]
rs9490167	1.00[AFR][1000 genomes]
rs9490170	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv604572	chr6:121465011-121544876	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121447200-121473800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:121447200-121474200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:121447200-121475000	Weak transcription	Primary B cells from cord blood	blood
4	chr6:121447400-121474200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:121447600-121473200	Weak transcription	Primary T cells from cord blood	blood
6	chr6:121463400-121469600	Weak transcription	Fetal Stomach	stomach
7	chr6:121463600-121474200	Weak transcription	Ovary	ovary
8	chr6:121463600-121476800	Weak transcription	Gastric	stomach
9	chr6:121463800-121474400	Weak transcription	Pancreas	Pancrea
10	chr6:121464200-121473200	Weak transcription	Dnd41	blood
11	chr6:121465400-121474400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:121465600-121473800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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