Variant report

Variant	rs7745023
Chromosome Location	chr6:121577370-121577371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121577028..121580353-chr6:121583189..121585636,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10457414	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10457415	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499106	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10499109	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11153999	0.88[CEU][hapmap];0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs11154001	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs11154002	0.85[EUR][1000 genomes]
rs11154005	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11154011	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11154012	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759795	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12191616	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12192398	0.96[CEU][hapmap]
rs12198421	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12206641	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs12212646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13199297	1.00[ASW][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap]
rs17644324	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs407630	1.00[ASW][hapmap];0.91[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap]
rs7742017	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9387918	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121536600-121585400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:121536800-121584400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:121537000-121584600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr6:121541200-121585000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:121544400-121581600	Weak transcription	HSMM	muscle
6	chr6:121544800-121581400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:121556600-121581800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:121556800-121581600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:121566600-121581600	Weak transcription	Gastric	stomach
10	chr6:121566800-121581600	Weak transcription	Ovary	ovary
11	chr6:121567000-121577400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:121567000-121581600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:121567200-121588000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:121567800-121581800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:121568600-121581000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:121568600-121581600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:121568800-121582000	Weak transcription	Dnd41	blood
18	chr6:121570600-121584600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:121571200-121582600	Weak transcription	Primary B cells from cord blood	blood
20	chr6:121571600-121583800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:121572800-121583600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:121573600-121582800	Weak transcription	Brain Hippocampus Middle	brain
23	chr6:121573600-121584600	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr6:121573800-121578200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:121573800-121581600	Weak transcription	Fetal Intestine Small	intestine
26	chr6:121573800-121584200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr6:121573800-121584800	Weak transcription	Fetal Intestine Large	intestine
28	chr6:121573800-121586600	Weak transcription	Fetal Lung	lung
29	chr6:121573800-121587000	Weak transcription	Fetal Kidney	kidney
30	chr6:121575000-121581600	Weak transcription	Primary T cells from cord blood	blood
31	chr6:121575000-121606400	Weak transcription	NH-A	brain
32	chr6:121575400-121580400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:121575600-121581600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr6:121575600-121581600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links