Variant report

Variant	rs9387918
Chromosome Location	chr6:121403420-121403421
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121399181..121401952-chr6:121402264..121404345,2	K562	blood:
2	chr6:121393095..121394934-chr6:121401987..121403872,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10456938	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10457413	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10457414	0.85[CEU][hapmap]
rs11153985	0.80[EUR][1000 genomes]
rs11153986	0.80[EUR][1000 genomes]
rs11153999	0.89[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11154001	0.83[CEU][hapmap];0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11154002	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11154012	0.92[CEU][hapmap]
rs11759795	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs12192398	0.96[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12193286	0.80[EUR][1000 genomes]
rs12201207	0.80[EUR][1000 genomes]
rs12206641	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12212646	0.95[CEU][hapmap]
rs12214337	0.80[EUR][1000 genomes]
rs1290679	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13199297	0.81[CEU][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17644324	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs1935944	0.81[EUR][1000 genomes]
rs1935946	0.81[EUR][1000 genomes]
rs2203590	0.81[EUR][1000 genomes]
rs28877073	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs407630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs421242	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4945673	0.82[EUR][1000 genomes]
rs6923560	0.80[EUR][1000 genomes]
rs6940453	0.80[EUR][1000 genomes]
rs6940928	0.81[EUR][1000 genomes]
rs7745023	0.92[CEU][hapmap]
rs7748027	0.81[EUR][1000 genomes]
rs9482115	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv886592	chr6:121260089-121425387	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv886593	chr6:121362591-121414770	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv1830193	chr6:121392847-121425387	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121390800-121444000	Weak transcription	Ovary	ovary

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