Variant report

Variant	rs10457413
Chromosome Location	chr6:121472798-121472799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10456938	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153999	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11154001	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11154002	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11759795	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12192398	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206641	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1290679	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13199297	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17644324	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs28877073	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs407630	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs421242	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9387918	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv604572	chr6:121465011-121544876	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121447200-121473800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:121447200-121474200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:121447200-121475000	Weak transcription	Primary B cells from cord blood	blood
4	chr6:121447400-121474200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:121447600-121473200	Weak transcription	Primary T cells from cord blood	blood
6	chr6:121463600-121474200	Weak transcription	Ovary	ovary
7	chr6:121463600-121476800	Weak transcription	Gastric	stomach
8	chr6:121463800-121474400	Weak transcription	Pancreas	Pancrea
9	chr6:121464200-121473200	Weak transcription	Dnd41	blood
10	chr6:121465400-121474400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:121465600-121473800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:121469400-121477800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:121470000-121474200	Weak transcription	Fetal Stomach	stomach
14	chr6:121470000-121474400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:121471200-121474000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:121472600-121474200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:121472600-121474400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:121472600-121481600	Weak transcription	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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