Variant report

Variant	rs10456938
Chromosome Location	chr6:121463199-121463200
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10457413	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457414	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12192398	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206641	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1290679	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13199297	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28877073	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs407630	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs421242	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9387918	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv966656	chr6:121458378-121463465	ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121446800-121464600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:121447000-121463200	Weak transcription	Ovary	ovary
3	chr6:121447200-121463200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:121447200-121465000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:121447200-121473800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:121447200-121474200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:121447200-121475000	Weak transcription	Primary B cells from cord blood	blood
8	chr6:121447400-121474200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:121447600-121473200	Weak transcription	Primary T cells from cord blood	blood
10	chr6:121447800-121465000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:121459400-121464400	Weak transcription	HSMM	muscle
12	chr6:121460600-121463200	Weak transcription	Fetal Stomach	stomach
13	chr6:121462400-121464200	ZNF genes & repeats	Dnd41	blood
14	chr6:121462600-121463200	Weak transcription	Gastric	stomach
15	chr6:121462800-121463600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:121463000-121463200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
17	chr6:121463000-121463200	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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