Variant report

Variant	rs774544
Chromosome Location	chr3:98731366-98731367
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1082403	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1082405	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10935514	0.95[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs10935587	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12632798	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs13316760	0.86[CEU][hapmap];0.88[JPT][hapmap]
rs1371687	0.95[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs1383906	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1383907	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2128052	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2170404	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2340794	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2449046	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2470770	0.83[ASN][1000 genomes]
rs2470814	0.89[AMR][1000 genomes]
rs2470873	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2470877	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2470878	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2470880	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs278387	0.81[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs278388	0.95[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap]
rs35936923	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4577404	0.81[ASN][1000 genomes]
rs4857416	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6774875	0.94[JPT][hapmap]
rs7615628	0.89[JPT][hapmap]
rs7615856	0.86[CEU][hapmap];0.94[JPT][hapmap]
rs774535	0.83[ASN][1000 genomes]
rs774537	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs774538	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs774539	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs774547	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs809575	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs828614	0.83[CEU][hapmap];0.89[JPT][hapmap]
rs828616	0.86[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap]
rs828617	0.86[CEU][hapmap];0.94[JPT][hapmap]
rs828621	0.82[CEU][hapmap];0.94[JPT][hapmap]
rs852701	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap]
rs955351	0.91[CEU][hapmap];0.94[JPT][hapmap]
rs964163	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv980100	chr3:98714787-98766962	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv18056	chr3:98726549-98736401	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs774544	DCBLD2	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98726600-98740400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:98730600-98731400	Enhancers	HSMM	muscle
3	chr3:98730600-98732000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:98730800-98732200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:98731000-98731400	Enhancers	Primary B cells from peripheral blood	blood
6	chr3:98731200-98731800	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links