Variant report
Variant | rs774547 |
---|---|
Chromosome Location | chr3:98740656-98740657 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1082403 | 0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1082405 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10935514 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
rs10935587 | 0.87[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs12632798 | 0.83[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap] |
rs13316760 | 0.85[CHB][hapmap];0.94[JPT][hapmap] |
rs1371687 | 0.90[CHB][hapmap];0.95[JPT][hapmap] |
rs1383906 | 0.82[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs1383907 | 0.84[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs2128052 | 0.86[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs2170404 | 0.81[ASN][1000 genomes] |
rs2439237 | 0.84[JPT][hapmap] |
rs2449046 | 0.84[ASN][1000 genomes] |
rs2470873 | 0.84[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs2470877 | 0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs2470878 | 0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs2470880 | 0.85[ASN][1000 genomes] |
rs35936923 | 0.84[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs4857416 | 0.85[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs6774875 | 0.85[CHB][hapmap];0.95[JPT][hapmap] |
rs7615628 | 0.85[CHB][hapmap];0.94[JPT][hapmap] |
rs7615856 | 0.85[CHB][hapmap];0.95[JPT][hapmap] |
rs774535 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs774537 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs774538 | 0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs774539 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs774544 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs809575 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs828616 | 0.90[CHB][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap] |
rs828617 | 0.85[CHB][hapmap];0.95[JPT][hapmap] |
rs828621 | 0.85[CHB][hapmap];0.95[JPT][hapmap] |
rs852701 | 0.95[CHB][hapmap];0.81[CHD][hapmap] |
rs955351 | 0.85[CHB][hapmap];0.95[JPT][hapmap] |
rs964163 | 0.85[AMR][1000 genomes];0.92[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv591065 | chr3:98204198-98766326 | Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
2 | nsv1007140 | chr3:98421229-99202458 | Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
3 | nsv536663 | chr3:98421229-99202458 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
4 | nsv1007486 | chr3:98597738-99249081 | Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
5 | nsv980100 | chr3:98714787-98766962 | Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
6 | nsv963577 | chr3:98736986-98766962 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:98740400-98741200 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
2 | chr3:98740400-98741200 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |