Variant report

Variant	rs7745500
Chromosome Location	chr6:15829439-15829440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17418707	1.00[YRI][hapmap]
rs58657296	1.00[AFR][1000 genomes]
rs59842754	0.88[AFR][1000 genomes]
rs60163716	0.88[AFR][1000 genomes]
rs6459416	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs6912998	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs73366632	0.88[AFR][1000 genomes]
rs73366640	0.88[AFR][1000 genomes]
rs73366641	0.88[AFR][1000 genomes]
rs7739125	1.00[AFR][1000 genomes]
rs7749868	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970653	chr6:15826001-15833990	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15825800-15842800	Weak transcription	Right Atrium	heart
2	chr6:15828800-15830000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:15828800-15830200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:15829000-15830000	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:15829000-15830200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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