Variant report

Variant	rs7745567
Chromosome Location	chr6:37315471-37315472
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs195409	0.81[YRI][hapmap]
rs2055272	0.82[CEU][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes]
rs2295244	0.82[CEU][hapmap];0.92[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4711493	0.80[AMR][1000 genomes]
rs4714055	0.82[TSI][hapmap]
rs4714057	0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6914506	0.82[CEU][hapmap]
rs9349037	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9368993	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9380660	0.82[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];0.88[YRI][hapmap];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9462298	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7745567	TREM1	cis	parietal	SCAN
rs7745567	KCTD20	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37315200-37315800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:37315400-37316000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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