Variant report

Variant	rs9368993
Chromosome Location	chr6:37302305-37302306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37300785..37302603-chr6:37307878..37309457,2	K562	blood:
2	chr6:37299695..37302500-chr6:37310796..37313153,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs195371	0.86[AFR][1000 genomes]
rs195389	0.81[YRI][hapmap]
rs195409	0.96[YRI][hapmap]
rs2055272	0.96[CEU][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2295244	0.95[CEU][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2622885	0.87[CEU][hapmap]
rs3778015	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3818136	0.87[CEU][hapmap];0.82[TSI][hapmap]
rs4711493	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4714053	0.87[CEU][hapmap]
rs4714055	0.91[CEU][hapmap];0.85[TSI][hapmap];0.80[AMR][1000 genomes]
rs4714057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6914506	0.96[CEU][hapmap];0.85[TSI][hapmap];0.80[AMR][1000 genomes]
rs6924626	0.87[CEU][hapmap]
rs7745567	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9349037	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380656	0.86[CEU][hapmap]
rs9380660	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521807	chr6:37295630-37305622	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9368993	TREM1	cis	parietal	SCAN

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37290600-37302800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:37291600-37303000	Weak transcription	Fetal Brain Male	brain
3	chr6:37292000-37308400	Weak transcription	Hela-S3	cervix
4	chr6:37292400-37303600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:37292600-37303600	Weak transcription	HMEC	breast
6	chr6:37292600-37308400	Weak transcription	HSMM	muscle
7	chr6:37292800-37302400	Weak transcription	Fetal Heart	heart
8	chr6:37292800-37303400	Weak transcription	NHDF-Ad	bronchial
9	chr6:37292800-37307600	Weak transcription	Fetal Kidney	kidney
10	chr6:37293200-37302600	Weak transcription	Stomach Mucosa	stomach
11	chr6:37297000-37302600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:37297200-37302400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:37297200-37302400	Strong transcription	Fetal Thymus	thymus
14	chr6:37298600-37302400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:37299800-37302600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:37299800-37303400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:37299800-37304600	Weak transcription	Small Intestine	intestine
18	chr6:37299800-37304600	Weak transcription	HSMMtube	muscle
19	chr6:37299800-37308200	Weak transcription	NHLF	lung
20	chr6:37300000-37308000	Weak transcription	Brain Substantia Nigra	brain
21	chr6:37300200-37302600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr6:37300400-37303000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:37300400-37311200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:37300600-37302400	Weak transcription	Esophagus	oesophagus
25	chr6:37300600-37302400	Weak transcription	Gastric	stomach
26	chr6:37300600-37302800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr6:37300600-37302800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr6:37300600-37302800	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr6:37300600-37303600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:37300600-37303600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:37300600-37304200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:37300600-37307800	Weak transcription	Brain Hippocampus Middle	brain
33	chr6:37300600-37307800	Weak transcription	Fetal Lung	lung
34	chr6:37300600-37308000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:37300600-37308400	Weak transcription	Aorta	Aorta
36	chr6:37300600-37309800	Weak transcription	Spleen	Spleen
37	chr6:37300800-37302600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr6:37300800-37302800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:37300800-37304400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:37300800-37306200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:37301000-37302800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr6:37301000-37302800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr6:37301000-37302800	Weak transcription	Pancreas	Pancrea
44	chr6:37301000-37302800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr6:37301000-37303600	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr6:37301000-37303600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr6:37301000-37303800	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr6:37301000-37304200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr6:37301000-37304200	Weak transcription	Lung	lung
50	chr6:37301000-37305000	Weak transcription	Fetal Muscle Leg	muscle

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