Variant report

Variant	rs3818136
Chromosome Location	chr6:37252210-37252211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37250673..37254138-chr6:37255765..37259618,4	K562	blood:
2	chr6:37252085..37257421-chr6:37258046..37261866,6	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10947665	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs166393	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1874738	0.81[AMR][1000 genomes]
rs2055272	0.94[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295244	0.91[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2622885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs262925	0.81[LWK][hapmap]
rs3778015	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711493	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4714053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714055	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914506	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739827	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7771855	0.84[EUR][1000 genomes]
rs9357245	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9380656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9380660	0.82[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3818136	TREM1	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37226600-37259400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:37232400-37255000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:37242000-37281400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:37246000-37256600	Genic enhancers	Dnd41	blood
5	chr6:37246000-37259600	Weak transcription	Small Intestine	intestine
6	chr6:37246200-37253200	Strong transcription	NHEK	skin
7	chr6:37246200-37253800	Genic enhancers	Fetal Thymus	thymus
8	chr6:37246200-37256400	Strong transcription	HepG2	liver
9	chr6:37246400-37258000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:37246600-37252600	Enhancers	Psoas Muscle	Psoas
11	chr6:37246600-37255600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:37246600-37256200	Strong transcription	Primary T cells from cord blood	blood
13	chr6:37246600-37256200	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:37246600-37256600	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:37246800-37253000	Genic enhancers	Fetal Muscle Leg	muscle
16	chr6:37246800-37255600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:37246800-37255800	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:37246800-37256200	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr6:37246800-37256400	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr6:37246800-37263400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:37246800-37264600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:37246800-37266200	Strong transcription	Duodenum Mucosa	Duodenum
23	chr6:37247000-37252800	Strong transcription	Primary B cells from peripheral blood	blood
24	chr6:37247000-37255800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:37247000-37256400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr6:37247000-37258000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:37247000-37263800	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:37247000-37264000	Strong transcription	Fetal Intestine Large	intestine
29	chr6:37247000-37264400	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr6:37247000-37265800	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr6:37247200-37253000	Strong transcription	Esophagus	oesophagus
32	chr6:37247200-37253200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:37247200-37253800	Strong transcription	Fetal Intestine Small	intestine
34	chr6:37247200-37253800	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr6:37247200-37255600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr6:37247200-37256200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:37247200-37256800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr6:37247200-37263800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:37247400-37252800	Strong transcription	Fetal Brain Female	brain
40	chr6:37247400-37253000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:37247400-37255200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
42	chr6:37247600-37266000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:37248000-37255200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:37248000-37263400	Strong transcription	Placenta	Placenta
45	chr6:37248200-37258200	Strong transcription	HSMM	muscle
46	chr6:37248200-37263400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:37248400-37252600	Strong transcription	Gastric	stomach
48	chr6:37248400-37252600	Strong transcription	Lung	lung
49	chr6:37248400-37253000	Strong transcription	Primary B cells from cord blood	blood
50	chr6:37248400-37257600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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