Variant report

Variant	rs3778015
Chromosome Location	chr6:37282199-37282200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36843073..36845440-chr6:37281034..37282864,2	K562	blood:
2	chr6:37282099..37284245-chr6:37290002..37291830,2	K562	blood:
3	chr6:37017164..37020087-chr6:37281669..37283613,2	K562	blood:
4	chr6:37281296..37284244-chr6:37292284..37294312,2	K562	blood:
5	chr6:37239434..37242325-chr6:37280434..37282809,2	K562	blood:
6	chr6:36843073..36845711-chr6:37281034..37284112,3	K562	blood:
7	chr6:37281610..37286621-chr6:37292182..37294312,4	K562	blood:
8	chr6:37281351..37283268-chr6:37319089..37321813,2	K562	blood:
9	chr6:37188223..37190409-chr6:37281169..37282824,2	K562	blood:
10	chr6:37269212..37274068-chr6:37276535..37284218,11	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112130	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10947665	0.80[EUR][1000 genomes]
rs10947668	0.81[EUR][1000 genomes]
rs166393	0.82[EUR][1000 genomes]
rs1874738	0.90[AMR][1000 genomes]
rs2055272	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295244	0.95[CEU][hapmap];0.90[CHB][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2622885	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3818136	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4714053	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714057	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6914506	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924626	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739827	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9349037	0.80[AMR][1000 genomes]
rs9368993	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9380656	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9380660	0.86[CEU][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9462298	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37251000-37283800	Weak transcription	Hela-S3	cervix
2	chr6:37253000-37284600	Weak transcription	Stomach Mucosa	stomach
3	chr6:37261600-37286000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:37265600-37283200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:37271200-37283600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:37271800-37285600	Weak transcription	Small Intestine	intestine
7	chr6:37273400-37285400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:37274600-37287000	Weak transcription	HMEC	breast
9	chr6:37276400-37285000	Weak transcription	Right Atrium	heart
10	chr6:37277600-37284800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:37277600-37298600	Weak transcription	Psoas Muscle	Psoas
12	chr6:37279200-37290000	Strong transcription	Liver	Liver
13	chr6:37279400-37291400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:37279400-37292400	Strong transcription	Primary T cells from cord blood	blood
15	chr6:37279600-37287600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:37279600-37289600	Strong transcription	Placenta	Placenta
17	chr6:37279600-37291000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:37279600-37291400	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr6:37279800-37282200	Genic enhancers	K562	blood
20	chr6:37279800-37283200	Weak transcription	HUVEC	blood vessel
21	chr6:37279800-37290000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:37279800-37292400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr6:37280000-37283600	Weak transcription	NHDF-Ad	bronchial
24	chr6:37280000-37284000	Weak transcription	Brain Substantia Nigra	brain
25	chr6:37280000-37291200	Strong transcription	Fetal Muscle Leg	muscle
26	chr6:37280000-37291600	Strong transcription	Thymus	Thymus
27	chr6:37280000-37292800	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr6:37280000-37292800	Strong transcription	Dnd41	blood
29	chr6:37280200-37282400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
30	chr6:37280200-37282600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr6:37280200-37283400	Strong transcription	Fetal Muscle Trunk	muscle
32	chr6:37280200-37286200	Strong transcription	HSMMtube	muscle
33	chr6:37280200-37287000	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:37280200-37287200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
35	chr6:37280200-37288600	Strong transcription	Stomach Smooth Muscle	stomach
36	chr6:37280200-37290000	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:37280200-37290600	Strong transcription	Adipose Nuclei	Adipose
38	chr6:37280200-37290800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr6:37280200-37291000	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr6:37280200-37291400	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr6:37280400-37282400	Strong transcription	Right Ventricle	heart
42	chr6:37280400-37283600	Strong transcription	GM12878-XiMat	blood
43	chr6:37280400-37284000	Strong transcription	Brain Anterior Caudate	brain
44	chr6:37280400-37286400	Strong transcription	Brain Germinal Matrix	brain
45	chr6:37280400-37287200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:37280400-37287800	Strong transcription	H9 Cell Line	embryonic stem cell
47	chr6:37280400-37289600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
48	chr6:37280400-37289600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:37280400-37290800	Strong transcription	Duodenum Mucosa	Duodenum
50	chr6:37280400-37290800	Strong transcription	Lung	lung

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