Variant report

Variant	rs4714053
Chromosome Location	chr6:37249615-37249616
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37247600..37250323-chr6:37252461..37254000,2	K562	blood:
2	chr6:37208175..37211022-chr6:37248021..37250204,2	K562	blood:
3	chr6:37246383..37248879-chr6:37249082..37251574,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10947665	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs166393	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1874738	0.81[AMR][1000 genomes]
rs2055272	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295244	0.91[CEU][hapmap];0.90[CHB][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2622885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3778015	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711493	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4714055	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914506	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739827	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7771855	0.84[EUR][1000 genomes]
rs9357245	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9380656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9380660	0.82[CEU][hapmap]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37226400-37250400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:37226600-37250000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:37226600-37259400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:37227000-37250000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:37227200-37250200	Weak transcription	Brain Angular Gyrus	brain
6	chr6:37232400-37255000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:37233400-37250400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:37234000-37251800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:37236000-37250200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:37237800-37251000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:37238800-37250200	Weak transcription	A549	lung
12	chr6:37238800-37250200	Weak transcription	HUVEC	blood vessel
13	chr6:37238800-37250600	Weak transcription	NHDF-Ad	bronchial
14	chr6:37240200-37250000	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr6:37240400-37249800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:37240600-37250400	Weak transcription	Aorta	Aorta
17	chr6:37241200-37251400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:37241800-37251000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr6:37242000-37281400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:37242600-37250200	Weak transcription	Fetal Kidney	kidney
21	chr6:37245200-37250400	Weak transcription	Pancreas	Pancrea
22	chr6:37245400-37250400	Weak transcription	Fetal Brain Male	brain
23	chr6:37246000-37256600	Genic enhancers	Dnd41	blood
24	chr6:37246000-37259600	Weak transcription	Small Intestine	intestine
25	chr6:37246200-37250000	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr6:37246200-37253200	Strong transcription	NHEK	skin
27	chr6:37246200-37253800	Genic enhancers	Fetal Thymus	thymus
28	chr6:37246200-37256400	Strong transcription	HepG2	liver
29	chr6:37246400-37258000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:37246600-37252600	Enhancers	Psoas Muscle	Psoas
31	chr6:37246600-37255600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:37246600-37256200	Strong transcription	Primary T cells from cord blood	blood
33	chr6:37246600-37256200	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr6:37246600-37256600	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr6:37246800-37250000	Weak transcription	Colonic Mucosa	Colon
36	chr6:37246800-37253000	Genic enhancers	Fetal Muscle Leg	muscle
37	chr6:37246800-37255600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:37246800-37255800	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr6:37246800-37256200	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr6:37246800-37256400	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr6:37246800-37263400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:37246800-37264600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:37246800-37266200	Strong transcription	Duodenum Mucosa	Duodenum
44	chr6:37247000-37252000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:37247000-37252800	Strong transcription	Primary B cells from peripheral blood	blood
46	chr6:37247000-37255800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:37247000-37256400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr6:37247000-37258000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:37247000-37263800	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr6:37247000-37264000	Strong transcription	Fetal Intestine Large	intestine

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