Variant report

Variant	rs7771855
Chromosome Location	chr6:37232157-37232158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37228464..37231833-chr6:37231945..37233770,3	K562	blood:
2	chr6:37190337..37192037-chr6:37231532..37234101,2	K562	blood:
3	chr6:37225685..37227248-chr6:37229703..37232212,2	MCF-7	breast:
4	chr6:37177179..37179979-chr6:37232016..37233735,2	K562	blood:
5	chr6:37208961..37211353-chr6:37230274..37233612,3	K562	blood:
6	chr6:37221803..37229301-chr6:37229686..37238425,11	K562	blood:
7	chr6:37217456..37219372-chr6:37229675..37232557,2	K562	blood:

Variant related genes	Relation type
ENSG00000172738	Chromatin interaction
ENSG00000065491	Chromatin interaction
ENSG00000238375	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10947665	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs166393	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2622885	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3818136	0.84[EUR][1000 genomes]
rs4714053	0.84[EUR][1000 genomes]
rs6924626	0.84[EUR][1000 genomes]
rs7739827	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9357245	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9380656	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37226400-37244000	Weak transcription	Gastric	stomach
2	chr6:37226400-37247200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:37226400-37250400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:37226600-37232200	Weak transcription	Ovary	ovary
5	chr6:37226600-37232600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:37226600-37234400	Weak transcription	Fetal Intestine Small	intestine
7	chr6:37226600-37237000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:37226600-37237400	Weak transcription	Placenta	Placenta
9	chr6:37226600-37237400	Weak transcription	HSMM	muscle
10	chr6:37226600-37240200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:37226600-37240200	Weak transcription	Aorta	Aorta
12	chr6:37226600-37243000	Weak transcription	Pancreas	Pancrea
13	chr6:37226600-37247200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:37226600-37247200	Weak transcription	Esophagus	oesophagus
15	chr6:37226600-37250000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:37226600-37259400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr6:37226800-37237400	Weak transcription	NHDF-Ad	bronchial
18	chr6:37226800-37247000	Weak transcription	HSMMtube	muscle
19	chr6:37227000-37236800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:37227000-37237000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:37227000-37247200	Weak transcription	Right Atrium	heart
22	chr6:37227000-37250000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:37227200-37232400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:37227200-37237200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:37227200-37237400	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:37227200-37238400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:37227200-37241400	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:37227200-37247200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:37227200-37247200	Weak transcription	Brain Substantia Nigra	brain
30	chr6:37227200-37247200	Weak transcription	NHLF	lung
31	chr6:37227200-37250200	Weak transcription	Brain Angular Gyrus	brain
32	chr6:37227400-37232400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr6:37227400-37232600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr6:37227400-37232600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr6:37227400-37234200	Weak transcription	Fetal Stomach	stomach
36	chr6:37227400-37234400	Weak transcription	Fetal Muscle Leg	muscle
37	chr6:37227400-37235600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr6:37227400-37235800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr6:37227400-37236000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:37227400-37236600	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr6:37227400-37237000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr6:37227400-37237000	Weak transcription	Osteobl	bone
43	chr6:37227400-37237200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:37227400-37237400	Weak transcription	NH-A	brain
45	chr6:37227400-37237600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr6:37227400-37238400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:37227400-37238400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:37227400-37238400	Weak transcription	A549	lung
49	chr6:37227400-37239000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:37227400-37240200	Weak transcription	Psoas Muscle	Psoas

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