Variant report

Variant	rs1874738
Chromosome Location	chr6:37301586-37301587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37293681..37294200-chr6:37301446..37302191,2	K562	blood:
2	chr6:37296478..37299221-chr6:37300461..37302140,2	K562	blood:
3	chr6:37300785..37302603-chr6:37307878..37309457,2	K562	blood:
4	chr6:37299695..37302500-chr6:37310796..37313153,2	K562	blood:
5	chr6:37295574..37298465-chr6:37299510..37301716,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2055272	0.91[AMR][1000 genomes]
rs2295244	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3778015	0.90[AMR][1000 genomes]
rs3818136	0.81[AMR][1000 genomes]
rs4711493	0.91[AMR][1000 genomes]
rs4714053	0.81[AMR][1000 genomes]
rs4714055	0.90[AMR][1000 genomes]
rs6914506	0.90[AMR][1000 genomes]
rs6924626	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521807	chr6:37295630-37305622	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37287200-37302000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:37288600-37301600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:37290600-37302800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:37291600-37303000	Weak transcription	Fetal Brain Male	brain
5	chr6:37292000-37308400	Weak transcription	Hela-S3	cervix
6	chr6:37292400-37302200	Weak transcription	A549	lung
7	chr6:37292400-37303600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:37292600-37303600	Weak transcription	HMEC	breast
9	chr6:37292600-37308400	Weak transcription	HSMM	muscle
10	chr6:37292800-37302400	Weak transcription	Fetal Heart	heart
11	chr6:37292800-37303400	Weak transcription	NHDF-Ad	bronchial
12	chr6:37292800-37307600	Weak transcription	Fetal Kidney	kidney
13	chr6:37293200-37302600	Weak transcription	Stomach Mucosa	stomach
14	chr6:37296600-37301600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:37296600-37302200	Strong transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:37297000-37301800	Strong transcription	Primary T cells from cord blood	blood
17	chr6:37297000-37302200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:37297000-37302200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:37297000-37302600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:37297200-37301600	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:37297200-37301600	Strong transcription	Duodenum Mucosa	Duodenum
22	chr6:37297200-37302400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:37297200-37302400	Strong transcription	Fetal Thymus	thymus
24	chr6:37297600-37302200	Strong transcription	Thymus	Thymus
25	chr6:37298200-37301600	Strong transcription	Fetal Stomach	stomach
26	chr6:37298600-37301600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:37298600-37301800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:37298600-37302000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:37298600-37302200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:37298600-37302200	Strong transcription	Fetal Muscle Trunk	muscle
31	chr6:37298600-37302400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:37298800-37302200	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr6:37299600-37302000	Weak transcription	Psoas Muscle	Psoas
34	chr6:37299800-37302600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr6:37299800-37303400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:37299800-37304600	Weak transcription	Small Intestine	intestine
37	chr6:37299800-37304600	Weak transcription	HSMMtube	muscle
38	chr6:37299800-37308200	Weak transcription	NHLF	lung
39	chr6:37300000-37301800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:37300000-37302000	Weak transcription	Right Ventricle	heart
41	chr6:37300000-37302200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr6:37300000-37308000	Weak transcription	Brain Substantia Nigra	brain
43	chr6:37300200-37302200	Weak transcription	HepG2	liver
44	chr6:37300200-37302600	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr6:37300400-37302000	Weak transcription	Colonic Mucosa	Colon
46	chr6:37300400-37302200	Weak transcription	Liver	Liver
47	chr6:37300400-37303000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:37300400-37311200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr6:37300600-37301800	Weak transcription	Left Ventricle	heart
50	chr6:37300600-37302200	Weak transcription	Colon Smooth Muscle	Colon

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