Variant report

Variant	rs195371
Chromosome Location	chr6:37304386-37304387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37302579..37305468-chr6:37307016..37308948,2	K562	blood:
2	chr6:37296385..37298657-chr6:37302566..37305470,2	MCF-7	breast:
3	chr6:37268575..37270100-chr6:37303447..37306274,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs169007	1.00[JPT][hapmap]
rs195369	0.98[ASN][1000 genomes]
rs195388	1.00[JPT][hapmap]
rs195389	1.00[JPT][hapmap]
rs195390	1.00[JPT][hapmap]
rs195391	1.00[JPT][hapmap]
rs195398	1.00[JPT][hapmap]
rs195403	1.00[CHB][hapmap];0.95[CHD][hapmap]
rs195407	0.86[ASN][1000 genomes]
rs195408	0.86[ASN][1000 genomes]
rs195409	1.00[CHB][hapmap];0.87[CHD][hapmap];0.86[ASN][1000 genomes]
rs195764	0.84[CEU][hapmap]
rs2295243	1.00[JPT][hapmap]
rs2622893	0.84[CEU][hapmap]
rs3734327	1.00[JPT][hapmap]
rs3734329	1.00[JPT][hapmap]
rs4714057	0.86[AFR][1000 genomes]
rs6920004	1.00[JPT][hapmap]
rs6940938	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758096	1.00[JPT][hapmap]
rs7768408	1.00[JPT][hapmap]
rs9368993	0.86[AFR][1000 genomes]
rs9380660	0.83[ASW][hapmap];0.81[GIH][hapmap];0.87[LWK][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes]
rs9462298	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521807	chr6:37295630-37305622	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37292000-37308400	Weak transcription	Hela-S3	cervix
2	chr6:37292600-37308400	Weak transcription	HSMM	muscle
3	chr6:37292800-37307600	Weak transcription	Fetal Kidney	kidney
4	chr6:37299800-37304600	Weak transcription	Small Intestine	intestine
5	chr6:37299800-37304600	Weak transcription	HSMMtube	muscle
6	chr6:37299800-37308200	Weak transcription	NHLF	lung
7	chr6:37300000-37308000	Weak transcription	Brain Substantia Nigra	brain
8	chr6:37300400-37311200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:37300600-37307800	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:37300600-37307800	Weak transcription	Fetal Lung	lung
11	chr6:37300600-37308000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:37300600-37308400	Weak transcription	Aorta	Aorta
13	chr6:37300600-37309800	Weak transcription	Spleen	Spleen
14	chr6:37300800-37304400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:37300800-37306200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:37301000-37305000	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:37301000-37306400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:37301000-37306400	Weak transcription	Fetal Brain Female	brain
19	chr6:37301200-37308000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:37301200-37308200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:37301200-37308200	Weak transcription	Osteobl	bone
22	chr6:37301400-37304600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:37301400-37305800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:37301400-37308200	Weak transcription	NH-A	brain
25	chr6:37301600-37304600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:37301600-37305400	Weak transcription	Fetal Stomach	stomach
27	chr6:37302200-37304400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:37302200-37305200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr6:37302200-37307800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:37302200-37308000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr6:37302200-37309400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:37302200-37310800	Weak transcription	Thymus	Thymus
33	chr6:37302400-37307800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:37302400-37308200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:37302400-37311200	Weak transcription	Fetal Thymus	thymus
36	chr6:37302600-37308200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:37302800-37306800	Weak transcription	Liver	Liver
38	chr6:37303200-37305000	Weak transcription	Brain Germinal Matrix	brain
39	chr6:37303200-37306800	Weak transcription	HepG2	liver

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