Variant report

Variant	rs195389
Chromosome Location	chr6:37310617-37310618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37310240..37313269-chr6:37321712..37324177,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112130	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1224310	1.00[CEU][hapmap]
rs169007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195396	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195397	1.00[ASN][1000 genomes]
rs195398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs195400	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2295243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734328	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6920456	1.00[ASN][1000 genomes]
rs6923752	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs735924	1.00[CEU][hapmap]
rs7758096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761597	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768797	1.00[ASN][1000 genomes]
rs9380660	0.85[YRI][hapmap]
rs9462289	1.00[CEU][hapmap]
rs9462290	1.00[CEU][hapmap]
rs9462293	1.00[CEU][hapmap]
rs9462294	1.00[CEU][hapmap]
rs9462299	1.00[ASN][1000 genomes]
rs9462300	1.00[ASN][1000 genomes]
rs9470534	1.00[CEU][hapmap]
rs9470543	1.00[CEU][hapmap]
rs9470554	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9470557	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9689746	0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs195389	FTSJD2	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37300400-37311200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:37302200-37310800	Weak transcription	Thymus	Thymus
3	chr6:37302400-37311200	Weak transcription	Fetal Thymus	thymus

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