Variant report

Variant	rs9462289
Chromosome Location	chr6:37227096-37227097
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:37226773-37227450	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr6:37226933-37227360	HUVEC	blood vessel:	n/a	n/a
3	ATF2	chr6:37226923-37228295	GM12878	blood:	n/a	n/a
4	POLR2A	chr6:37224713-37227590	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr6:37226962-37227366	GM12891	blood:	n/a	n/a
6	POLR2A	chr6:37227033-37227265	MCF10A-Er-Src	breast:	n/a	n/a
7	POLR2A	chr6:37225183-37227490	GM12891	blood:	n/a	n/a
8	POLR2A	chr6:37226883-37227349	GM12891	blood:	n/a	n/a
9	CUX1	chr6:37227013-37227413	K562	blood:	n/a	chr6:37227230-37227244
10	NFIC	chr6:37226935-37228734	GM12878	blood:	n/a	n/a
11	POLR2A	chr6:37225292-37227558	HUVEC	blood vessel:	n/a	n/a
12	FOS	chr6:37227029-37227228	MCF10A-Er-Src	breast:	n/a	n/a
13	POLR2A	chr6:37226967-37227395	GM12878	blood:	n/a	n/a
14	POLR2A	chr6:37224784-37227469	IMR90	lung:	n/a	n/a
15	POLR2A	chr6:37226962-37227239	GM12891	blood:	n/a	n/a
16	POLR2A	chr6:37226869-37227319	GM12892	blood:	n/a	n/a
17	POLR2A	chr6:37226812-37227487	GM12892	blood:	n/a	n/a
18	RELA	chr6:37226940-37227434	GM19099	blood:	n/a	chr6:37227184-37227193 chr6:37227184-37227193
19	GATA2	chr6:37227041-37227385	HUVEC	blood vessel:	n/a	n/a
20	FOS	chr6:37227028-37227307	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37138226..37140193-chr6:37227015..37228524,2	K562	blood:
2	chr6:37040055..37042190-chr6:37226411..37229127,2	K562	blood:

Variant related genes	Relation type
TMEM217	TF binding region

rs_ID	r²[population]
rs1224310	1.00[CEU][hapmap]
rs169007	1.00[CEU][hapmap]
rs195388	1.00[CEU][hapmap]
rs195389	1.00[CEU][hapmap]
rs195390	1.00[CEU][hapmap]
rs195391	1.00[CEU][hapmap]
rs195398	1.00[CEU][hapmap]
rs2295243	1.00[CEU][hapmap]
rs3734327	1.00[CEU][hapmap]
rs3734329	1.00[CEU][hapmap]
rs6920004	1.00[CEU][hapmap]
rs6923752	1.00[CEU][hapmap]
rs735924	1.00[CEU][hapmap]
rs7758096	1.00[CEU][hapmap]
rs7768408	1.00[CEU][hapmap]
rs9462290	1.00[CEU][hapmap]
rs9462293	1.00[CEU][hapmap]
rs9462294	1.00[CEU][hapmap]
rs9470534	1.00[CEU][hapmap]
rs9470543	1.00[CEU][hapmap]
rs9470554	1.00[CEU][hapmap]

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37224800-37227200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:37224800-37227200	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr6:37224800-37227200	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:37224800-37227400	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr6:37224800-37227600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:37225000-37227400	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr6:37225000-37227600	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr6:37225200-37227200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:37225200-37227400	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr6:37225200-37227400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:37225800-37227200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr6:37225800-37227200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr6:37225800-37227400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:37226000-37227200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chr6:37226000-37227400	Flanking Active TSS	Fetal Thymus	thymus
16	chr6:37226000-37227800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr6:37226000-37228000	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr6:37226000-37228200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:37226200-37227400	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr6:37226200-37227400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:37226200-37227400	Enhancers	Spleen	Spleen
22	chr6:37226200-37227400	Flanking Active TSS	NHEK	skin
23	chr6:37226200-37227600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:37226200-37227800	Flanking Active TSS	HUVEC	blood vessel
25	chr6:37226200-37228600	Flanking Active TSS	Dnd41	blood
26	chr6:37226400-37227200	Enhancers	Fetal Brain Male	brain
27	chr6:37226400-37227400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:37226400-37227400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:37226400-37227600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:37226400-37227600	Enhancers	Primary B cells from peripheral blood	blood
31	chr6:37226400-37227600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr6:37226400-37227800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:37226400-37227800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr6:37226400-37228000	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr6:37226400-37228000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:37226400-37229400	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr6:37226400-37230200	Weak transcription	Left Ventricle	heart
38	chr6:37226400-37231400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:37226400-37244000	Weak transcription	Gastric	stomach
40	chr6:37226400-37247200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:37226400-37250400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:37226600-37227200	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr6:37226600-37227200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr6:37226600-37227200	Enhancers	Brain Angular Gyrus	brain
45	chr6:37226600-37227200	Enhancers	Brain Hippocampus Middle	brain
46	chr6:37226600-37227200	Enhancers	Brain Substantia Nigra	brain
47	chr6:37226600-37227200	Enhancers	Colon Smooth Muscle	Colon
48	chr6:37226600-37227400	Enhancers	Primary T cells fromperipheralblood	blood
49	chr6:37226600-37227400	Enhancers	Brain Anterior Caudate	brain
50	chr6:37226600-37227400	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links