Variant report

Variant	rs9462294
Chromosome Location	chr6:37291701-37291702
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37282099..37284245-chr6:37290002..37291830,2	K562	blood:
2	chr6:37290599..37292900-chr6:37390289..37392598,3	K562	blood:

rs_ID	r²[population]
rs1224310	1.00[CEU][hapmap]
rs169007	1.00[CEU][hapmap]
rs195388	1.00[CEU][hapmap]
rs195389	1.00[CEU][hapmap]
rs195390	1.00[CEU][hapmap]
rs195391	1.00[CEU][hapmap]
rs195398	1.00[CEU][hapmap]
rs2295243	1.00[CEU][hapmap]
rs3734327	1.00[CEU][hapmap]
rs3734329	1.00[CEU][hapmap]
rs6920004	1.00[CEU][hapmap]
rs6923752	1.00[CEU][hapmap]
rs735924	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7758096	1.00[CEU][hapmap]
rs7768408	1.00[CEU][hapmap]
rs9462289	1.00[CEU][hapmap]
rs9462290	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9462292	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462293	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9462296	1.00[AMR][1000 genomes]
rs9470534	1.00[CEU][hapmap]
rs9470543	1.00[CEU][hapmap]
rs9470554	1.00[CEU][hapmap]
rs9470560	0.82[YRI][hapmap]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37277600-37298600	Weak transcription	Psoas Muscle	Psoas
2	chr6:37279400-37292400	Strong transcription	Primary T cells from cord blood	blood
3	chr6:37279800-37292400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr6:37280000-37292800	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:37280000-37292800	Strong transcription	Dnd41	blood
6	chr6:37280600-37292000	Strong transcription	H1 Cell Line	embryonic stem cell
7	chr6:37282800-37293000	Strong transcription	Fetal Thymus	thymus
8	chr6:37283400-37292200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr6:37285000-37298200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:37285000-37298600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:37285200-37291800	Weak transcription	Stomach Mucosa	stomach
12	chr6:37286000-37298600	Weak transcription	Brain Substantia Nigra	brain
13	chr6:37286000-37298800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:37286000-37299000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:37286200-37298800	Weak transcription	Small Intestine	intestine
16	chr6:37286400-37298600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:37286600-37299400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:37287200-37297600	Weak transcription	Esophagus	oesophagus
19	chr6:37287200-37301000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:37287200-37302000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr6:37287400-37293800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:37287600-37292400	Weak transcription	Colonic Mucosa	Colon
23	chr6:37287800-37293400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr6:37287800-37298600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:37287800-37298800	Weak transcription	Pancreas	Pancrea
26	chr6:37288000-37292400	Weak transcription	Fetal Kidney	kidney
27	chr6:37288000-37297800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:37288000-37298600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:37288000-37298800	Weak transcription	Brain Angular Gyrus	brain
30	chr6:37288200-37301200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr6:37288600-37298800	Weak transcription	Aorta	Aorta
32	chr6:37288600-37298800	Weak transcription	Right Ventricle	heart
33	chr6:37288600-37301600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:37289000-37292600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:37289000-37298600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:37289400-37300800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:37289600-37297000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr6:37289600-37298600	Weak transcription	Placenta	Placenta
39	chr6:37289600-37298600	Weak transcription	Gastric	stomach
40	chr6:37289600-37298800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr6:37289800-37292600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr6:37289800-37296600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr6:37289800-37297000	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr6:37289800-37297200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr6:37289800-37298400	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr6:37289800-37298400	Weak transcription	Brain Hippocampus Middle	brain
47	chr6:37290000-37299000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr6:37290200-37298200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:37290400-37292800	Enhancers	Muscle Satellite Cultured Cells	--
50	chr6:37290600-37291800	Weak transcription	Brain Anterior Caudate	brain

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